PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV53864.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | ZF-HD | ||||||||
Protein Properties | Length: 153aa MW: 17497.6 Da PI: 10.0779 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 38.8 | 2.1e-12 | 1 | 28 | 29 | 57 |
ZF-HD_dimer 29 mpsegeegtaaalkCaACgCHRnFHRrev 57 mps geegt +++CaAC+CHR+FHRr KZV53864.1 1 MPS-GEEGTFGSMRCAACNCHRSFHRRMD 28 566.889*******************975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 3.0E-6 | 1 | 26 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 11.076 | 1 | 27 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 2.9E-10 | 1 | 27 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 4.32E-20 | 76 | 150 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 9.6E-31 | 76 | 151 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 9.0E-28 | 89 | 146 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MPSGEEGTFG SMRCAACNCH RSFHRRMDAV VDPHRSQTSY GRRNPPAIET HHAEHAPAGP 60 TAESSSEDLH MLQSSPGGHA VASSSRGSKK RFRTKFDQEQ KDRMHEFADK LGWRIQRQDD 120 EIVQQFCSEV GVKRHVFKVW MHNNKQAMKK RQI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-23 | 88 | 147 | 16 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV53864.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011099626.1 | 7e-55 | zinc-finger homeodomain protein 6 | ||||
Swissprot | Q9ZPW7 | 6e-40 | ZHD6_ARATH; Zinc-finger homeodomain protein 6 | ||||
TrEMBL | A0A2G9I8I6 | 7e-53 | A0A2G9I8I6_9LAMI; Uncharacterized protein | ||||
STRING | EOX91076 | 2e-47 | (Theobroma cacao) | ||||
STRING | XP_008392268.1 | 1e-47 | (Malus domestica) | ||||
STRING | XP_004512050.1 | 1e-47 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA518 | 24 | 128 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G18350.1 | 2e-42 | homeobox protein 24 |