PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV53392.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family Dof
Protein Properties Length: 335aa    MW: 35255.5 Da    PI: 9.7827
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV53392.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.14e-3860120262
      zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                 +++alkcprC+s ntkfCy+nnyslsqPr+fCk+CrryWt+GGalr vPvGgg+r+nk+s+
  KZV53392.1  60 PDAALKCPRCESVNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRSVPVGGGCRRNKRSK 120
                 57899*****************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074784.0E-3148113IPR003851Zinc finger, Dof-type
PfamPF027012.0E-3262118IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.17164118IPR003851Zinc finger, Dof-type
PROSITE patternPS01361066102IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MNDMPQQNHQ IIVGSSSTNP LLPPPPQPAQ PAPSHGGGGS GTIRPGSMAE RARMANIPMP  60
DAALKCPRCE SVNTKFCYFN NYSLSQPRHF CKTCRRYWTR GGALRSVPVG GGCRRNKRSK  120
SVSSKSPASE NRQTATSSAG SISSNSGQEN NILGLTPQLP PLRFMSPLSQ LTDNFNDTMG  180
LNYSGISAPS LLGTGEMNFQ LGSGLFGNGG GNGGIGGGVA SLFASSGGGI IEPWRLQQVQ  240
QFPFLGGGLE PSSPGVYQFH GGEPALALGE TSQSVRPKLS SSMLSQMASV KIEENPGLNL  300
SRQLMGGMPR NDQWNATSAW SDISGFSSFS TSNPL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00483DAPTransfer from AT5G02460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV53392.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095199.11e-124dof zinc finger protein DOF5.1
TrEMBLA0A2Z7D1R00.0A0A2Z7D1R0_9LAMI; Uncharacterized protein
STRINGVIT_08s0007g00180.t011e-103(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19172463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55370.25e-41OBF-binding protein 3