PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV53323.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C3H
Protein Properties Length: 284aa    MW: 29903 Da    PI: 8.4164
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV53323.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41e-0789114227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                 kt++C+ f     C++Gd+C+FaHg+
  KZV53323.1  89 KTKICNKFNSAEGCRFGDKCHFAHGE 114
                 899*********************96 PP
2zf-CCCH38.51.9e-12251276127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +kt+lC++f++ G C +GdrC+FaHg+
  KZV53323.1 251 FKTKLCDNFSK-GSCTFGDRCHFAHGE 276
                 69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00356903351IPR000571Zinc finger, CCCH-type
PfamPF146080.843849No hitNo description
PROSITE profilePS501037.313952IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-886118IPR000571Zinc finger, CCCH-type
SMARTSM003567.5E-487114IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-1487119IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.77987115IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-589114IPR000571Zinc finger, CCCH-type
SuperFamilySSF547917.6E-8150220IPR004088K Homology domain, type 1
SMARTSM003220.0064155218IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.9E-8156217IPR004088K Homology domain, type 1
CDDcd001051.59E-8158213No hitNo description
Gene3DG3DSA:4.10.1000.108.0E-16249281IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-8250276IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-8250280IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.727250277IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-10251276IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MHLKYAADQP HVPHALGAVI PMIHPLVSGH VEGERIAGCP FGENCHFLHY VPGGYNAVAK  60
MMNLAPSPAP RTMAPPPSTL SGSAPAAVKT KICNKFNSAE GCRFGDKCHF AHGEWELGKP  120
NIPFQEDPRV GEAIPGRFGA RVEPSETGPA ASFGVSATAK ISVDASFVGA ILGKISRQTG  180
AKLAIREHES DPSLRNIELE GSFEQINQAS RMVRELIVSI GSTHIAAKPY GGPFGGFGRG  240
SGGAAAAGGN FKTKLCDNFS KGSCTFGDRC HFAHGEAELR KSVM
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV53323.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078827.11e-119zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R07e-82C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A2Z7D1S40.0A0A2Z7D1S4_9LAMI; Zinc finger CCCH domain-containing protein 14
STRINGXP_009767111.11e-115(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.15e-53C3H family protein