PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV53315.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HD-ZIP
Protein Properties Length: 310aa    MW: 34676 Da    PI: 5.532
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV53315.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox551.3e-17177231256
                 T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 rk+ ++tkeq   Le+ F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  KZV53315.1 177 RKKLRLTKEQSSFLEDSFKEHNTLNPRQKLSLAKQLNLRPRQVEVWFQNRRARTK 231
                 78889************************************************98 PP
2HD-ZIP_I/II126.51.1e-40177266191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rl+keq+++LE+sF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l+een+rL+ke +eLr +l
   KZV53315.1 177 RKKLRLTKEQSSFLEDSFKEHNTLNPRQKLSLAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKKCCERLTEENRRLHKELQELR-AL 266
                  69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.4E-18154234IPR009057Homeodomain-like
SuperFamilySSF466895.13E-19161234IPR009057Homeodomain-like
PROSITE profilePS5007117.119173233IPR001356Homeobox domain
SMARTSM003897.1E-16175237IPR001356Homeobox domain
CDDcd000868.74E-16177234No hitNo description
PfamPF000464.5E-15177231IPR001356Homeobox domain
PROSITE patternPS000270208231IPR017970Homeobox, conserved site
PfamPF021832.9E-10233267IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.6E-24233276IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MELALSLGDT PKPFSFLEKS VQVAVVDEDQ LGFRMAAGKL CTSGAENGGE RTDDPPVQLD  60
LMPFSPVHRS QSSILFTKFP FPWPAQNLIG EPRSELEVNR RTASLVNENP EDQTEAAAVA  120
VSGFQMDSSV IRNEVGTKRD FDSLVSVNCS EQLVDSNDGG GSSSRGSDED YENGMSRKKL  180
RLTKEQSSFL EDSFKEHNTL NPRQKLSLAK QLNLRPRQVE VWFQNRRART KLKQTEVDCE  240
YLKKCCERLT EENRRLHKEL QELRALKASQ PFYEHLPPTT LTMCPACEKV ATTSAATAGL  300
SLIADQRATF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1175181SRKKLRL
2225233RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV53315.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027066527.11e-109homeobox-leucine zipper protein HOX11
SwissprotP466659e-76HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A2Z7D2430.0A0A2Z7D243_9LAMI; Uncharacterized protein
STRINGVIT_08s0007g06670.t011e-99(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.19e-73homeobox from Arabidopsis thaliana