PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV53300.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ERF
Protein Properties Length: 208aa    MW: 22962.4 Da    PI: 6.1665
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV53300.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.21.2e-193887356
         AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                y+GVr+++ +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++aa+ +l+g+
  KZV53300.1 38 YRGVRRRS-WGKWVSEIREPRK---KSRIWLGTFQTAEMAARAHDAAAIALKGH 87
                9****887.**********843...6*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.0E-323795IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-223795IPR016177DNA-binding domain
SMARTSM003801.0E-3537100IPR001471AP2/ERF domain
PROSITE profilePS5103223.3013794IPR001471AP2/ERF domain
PRINTSPR003672.7E-113849IPR001471AP2/ERF domain
PfamPF008472.8E-133887IPR001471AP2/ERF domain
CDDcd000182.75E-213896No hitNo description
PRINTSPR003672.7E-116076IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MVDQVTTFDT DTATDHLHST QITSKKYSNK TRNCRQTYRG VRRRSWGKWV SEIREPRKKS  60
RIWLGTFQTA EMAARAHDAA AIALKGHTAF LNFPDLVHQL PRAASRAPKD VQAAAAEAAQ  120
LVVPVADHDF ERTNDHHSTI SNSDSNSFAD HDDITSADDA FLGLPDLILG ITGYENVHSL  180
FPALPAGGDT ILGEFSPENL LSGDDFYI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1837941472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV53300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081306.21e-57ethylene-responsive transcription factor ERF039-like
SwissprotQ9ZQP34e-39ERF38_ARATH; Ethylene-responsive transcription factor ERF038
TrEMBLA0A2Z7D2S71e-152A0A2Z7D2S7_9LAMI; Uncharacterized protein
STRINGevm.model.supercontig_89.733e-42(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35700.11e-28ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]