PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV53262.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | MYB | ||||||||
Protein Properties | Length: 350aa MW: 39266.3 Da PI: 6.4105 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.4 | 1.4e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd++l+d+++++G g+W+t + g+ R++k+c++rw +yl KZV53262.1 14 KGPWSQEEDQKLLDYIQKYGYGNWRTLPTNAGLQRCGKSCRLRWTNYL 61 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 47.2 | 5.2e-15 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rgr++ +E+e ++++ lG++ W++Ia++++ gRt++++k++w++ KZV53262.1 67 RGRFSFQEEETIIQLQSILGNK-WSLIAARLP-GRTDNEIKNFWNT 110 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-25 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 24.362 | 9 | 65 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.32E-30 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.9E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.77E-12 | 16 | 61 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 2.2E-23 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.0E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 18.015 | 66 | 116 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.7E-13 | 67 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.76E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 350 aa Download sequence Send to blast |
MGRSPCCEKN GLKKGPWSQE EDQKLLDYIQ KYGYGNWRTL PTNAGLQRCG KSCRLRWTNY 60 LRPDIKRGRF SFQEEETIIQ LQSILGNKWS LIAARLPGRT DNEIKNFWNT NIRKRLLRMG 120 IDPVTHSPLL HLLDLSTILK SPVFNNSSTQ MKFSTISGSQ PCIIPELLRF AASLFSSHHH 180 TQDFPMQNKV ISSNQFPPPL VQASVQDVAV HPHSCVDTKL VNPFALHADV QELHQNPSGY 240 GMPSSLIGEY VPLLIDGYCG SSTDPPFVDP TPSSVTSDVQ PYNYCSNDLG FQSSLSNMST 300 PSSCQTPLNS NNSPYVISCS STEDEMESYY NSLLQFEIPD SLDVNDFMLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 2e-30 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV53262.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096186.1 | 1e-141 | protein ODORANT1 | ||||
Swissprot | Q9LDR8 | 1e-107 | MY102_ARATH; Transcription factor MYB102 | ||||
TrEMBL | A0A2Z7D1A4 | 0.0 | A0A2Z7D1A4_9LAMI; Uncharacterized protein | ||||
STRING | cassava4.1_028193m | 1e-119 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 1e-109 | MYB-like 102 |
Publications ? help Back to Top | |||
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