PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV52778.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 484aa    MW: 53131.5 Da    PI: 9.7232
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV52778.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-056789123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C++C+k F r  nL+ H r H
  KZV52778.1 67 FICEICNKGFQRDQNLQLHRRGH 89
                89*******************88 PP
2zf-C2H212.80.00036144166123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k +  +s+ k H +t+
  KZV52778.1 144 WKCEKCSKKYAVQSDWKAHSKTC 166
                 58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.84E-76689No hitNo description
Gene3DG3DSA:3.30.160.601.5E-56689IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.8456789IPR007087Zinc finger, C2H2
PfamPF121715.8E-56789IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0226789IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806989IPR007087Zinc finger, C2H2
SMARTSM0035588109139IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.603.5E-5131165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.84E-7139164No hitNo description
SMARTSM00355140144164IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 484 aa     Download sequence    Send to blast
MSSDVFSVPI CSTKAFPQDL EQNPNPKSSS NNVPCSAKKR RNLPGTPDPD AEVIALSPGT  60
LMAKNRFICE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRAN KDQIKKKVYI CPEKTCVHHD  120
PARALGDLTG VKKHYSRKHG EKKWKCEKCS KKYAVQSDWK AHSKTCGTRE YKCDCGTLFS  180
RRDSFITHRA FCDALAEESA RNITTMGANN MHFRNEHALN GNLMNLQANN NPHLGSGFGG  240
GDPILWGDVN SNTHNKSRLP LWLDHKRNTS TPNSSLFIPP NSSPFPEMMQ MGSNNLFGYG  300
NLSLSPPPSQ SSLKEETFFS KGNAHTNTNT TIYTDSVSSQ LYSSETQIHH TAPKCSNSAP  360
MSATALLQKA AQIGSTKSNN TFFGNTAGVL MSTSSPSSSS TNALSFSNPF AESRSELDQV  420
FGKRPDIAGR LHGVADQNGP TRDFLGVGRG SRGDPFFSPE LAKFVSMNSP GGLSHFTGKS  480
IDEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-36140210372Zinc finger protein JACKDAW
5b3h_F1e-36140210372Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV52778.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094681.11e-178protein indeterminate-domain 9
TrEMBLA0A2Z7D6850.0A0A2Z7D685_9LAMI; Uncharacterized protein
STRINGPOPTR_0006s13130.11e-159(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G45260.12e-99C2H2-like zinc finger protein