PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV52706.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family TCP
Protein Properties Length: 293aa    MW: 32401.5 Da    PI: 6.3454
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV52706.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP115.47.5e-36171211102
         TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.........ssssaseceaesssssasnsssg.. 88 
                 a+g+kdrhsk+ T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+q+ak ai +l+++            ++s+++++s + ++++++++  
  KZV52706.1  17 ATGRKDRHSKVFTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKALDWLIQKAKNAINQLNELppwnpstdnAVAPSSDSNPSSGELAKDQPEIHpe 115
                 589**************************************************************7766544442222233344444444443333332 PP

         TCP  89 ...kaaksaakskksqk 102
                    +           ++
  KZV52706.1 116 ntsN-----------SN 121
                 2221...........11 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.4E-3318124IPR005333Transcription factor, TCP
PROSITE profilePS5136932.052078IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MKGSEIVQVQ GGHIIRATGR KDRHSKVFTA KGPRDRRVRL SAHTAIQFYD VQDRLGYDRP  60
SKALDWLIQK AKNAINQLNE LPPWNPSTDN AVAPSSDSNP SSGELAKDQP EIHPENTSNS  120
NPSTSTCSFM HTGDVNSMKS LFPSNSMNFS DFPNGGIIPR ASFQAEDLGL SLYPLQADQS  180
GDNPGHSHPL LSSPSLMGFQ DSFQRADNWN SGNGNMEVIS QQGFFSQGFP FPQRDLLQSN  240
LFAHAWNERP FGAADHSFQQ PRARQSSDSG NHFDFGFQIP AQFYAEDGEG MNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-202578154Putative transcription factor PCF6
5zkt_B1e-202578154Putative transcription factor PCF6
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV52706.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022877210.14e-85transcription factor TCP4-like
RefseqXP_022877211.14e-85transcription factor TCP4-like
TrEMBLA0A2Z7D6I70.0A0A2Z7D6I7_9LAMI; TCP transcription factor 10
STRINGXP_009629629.12e-70(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA66072234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.31e-46TCP family protein