PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV52634.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 960aa    MW: 106438 Da    PI: 5.3677
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV52634.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding621.2e-193379148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEde+  ++vk++G++ W+tIa++++ gR +kqc++rw+++l
       KZV52634.1 33 KGPWSKEEDEIMTELVKKYGPKKWSTIAQHLP-GRIGKQCRERWHNHL 79
                     79******************************.*************97 PP
2Myb_DNA-binding46.68.1e-1585127145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +WT++E++ l++a++ +G++ W+   + ++ gRt++ +k++w+
       KZV52634.1  85 KEAWTQDEELALIHAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 127
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.008127IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.8E-12843IPR009057Homeodomain-like
PROSITE profilePS5129431.8782883IPR017930Myb domain
SuperFamilySSF466894.49E-3130126IPR009057Homeodomain-like
SMARTSM007177.4E-183281IPR001005SANT/Myb domain
CDDcd001674.33E-163579No hitNo description
PfamPF139211.6E-173693No hitNo description
Gene3DG3DSA:1.10.10.602.3E-274486IPR009057Homeodomain-like
SMARTSM007174.3E-1484132IPR001005SANT/Myb domain
PROSITE profilePS5129419.20184134IPR017930Myb domain
CDDcd001676.84E-1187127No hitNo description
Gene3DG3DSA:1.10.10.607.0E-2187134IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003713Molecular Functiontranscription coactivator activity
Sequence ? help Back to Top
Protein Sequence    Length: 960 aa     Download sequence    Send to blast
MLHELRAAEC FKDRTDVQCL HRWQKVLNPE LVKGPWSKEE DEIMTELVKK YGPKKWSTIA  60
QHLPGRIGKQ CRERWHNHLN PNINKEAWTQ DEELALIHAH QIYGNKWAEL TKFLPGRTDN  120
AIKNHWNSSV KKKIDMYMAS GLLSQFQGPP LVTNAHKSAA SSSSRAQQSS EDGSARDGLE  180
LEEISECSQG SIMAGLSQCT NHVVNSTMEP NRGNCRVTEE SCAEPCSDDY RPAIREVSYS  240
IPEVPYEFGS TSKFLEHVLA LDWETFSGKD FQLNPNELLD MSLLDLGQES SGQFLSSLSV  300
MDNNETVPFP PETPFDASTS LGNTMANSDL PNFVVADSDC RMIYSDVGHD GYCPLENVTT  360
HIDGAAEQVV HHSLNFQIPE DGNFISQSCY MSSDVHGISY GQPPVPTQLP SDDGSLMFDV  420
KSNQHNYFSI SNTSQDSLLP CASDNFMSAK YSNCSHTEDM SNQKTGLSTQ VPANDFVFAP  480
SNDSQYHSAG DIDPAATNGH KDSGTLFYEP PRFPSLDIPF FSCDLIQSGS DMHQEYSPLG  540
IRQLMISSMT PFKLWDSPTR DDSPHAVLKS AAKSFTTTPS ILKKRRRDLV SPLSEQRGEK  600
KLGGDLNQES FSNLSSDFSR LEVMFDSCVN HKQSLPNISS SNNKNFETSY LGKENVAPPC  660
EKVKKEINER NVISDSKMLQ KELHSIDVPK ATGQTSITDV KTKAGGNETV ESKREFSGIL  720
VEHDINDMCL LSPDHRGCKT DISIGPSSRS LANQYPRRLD AIPKHGAIIS SSETPYLSVV  780
CSPRLLAKND GTTVVITTAL QSMSPSEKKV GNSGKGVAVE NTNIYVDTPF NRSIESPSAW  840
KSPWFINSFV PGPRVDTDIT IEDIGYFLSP GDRSYDAIGL MKQLGEHTAG AFADAQEVLG  900
DETPETILKA KRAEKDNHQN LNCLAEHHTL SASTFQVHWL RTVLRNCLFS SLFCTSKIWC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C6e-61813433159MYB PROTO-ONCOGENE PROTEIN
1h89_C6e-61813433159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00466DAPTransfer from AT4G32730Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV52634.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011089667.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_011089827.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_011089990.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_020553179.10.0transcription factor MYB3R-1 isoform X1
RefseqXP_020553183.10.0transcription factor MYB3R-1 isoform X1
TrEMBLA0A2Z7CZF50.0A0A2Z7CZF5_9LAMI; Myb-related protein 3R-1-like
STRINGMigut.E01513.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31072448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein