PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV52542.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 175aa    MW: 19834.2 Da    PI: 7.5902
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV52542.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.7e-052850123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C++ F++   L  H+++H
  KZV52542.1 28 YSCSFCSREFRSAQALGGHMNVH 50
                99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.36E-62554No hitNo description
Gene3DG3DSA:3.30.160.608.6E-42652IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00582850IPR015880Zinc finger, C2H2-like
PfamPF139122.1E-62851IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.4892855IPR007087Zinc finger, C2H2
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MDSNSQSSMD LCEDQAPLGS FIWPPRSYSC SFCSREFRSA QALGGHMNVH RRDRARLKQS  60
PSLQLSERSE NLLRQEHLPR GSSEHCRISF LDHIKIPTEV INDHPTFLDE HVGAHVHSSI  120
DNLFVKPTDC KRRKTTFISP PSPFSHACSS SRYGKISSVE EIDLELRLGD SQTVK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-132350229superman protein
2l1o_A3e-132350229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV52542.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7CZB81e-125A0A2Z7CZB8_9LAMI; Putative transcriptional regulator RABBIT EARS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21102453
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.13e-22C2H2 family protein