PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV52373.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | FAR1 | ||||||||
Protein Properties | Length: 192aa MW: 22047.4 Da PI: 9.8002 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 83.9 | 2.6e-26 | 23 | 110 | 1 | 88 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +fYn+YA++vGF vr+ + ++s+ +g++ r++ C+k+g++ + k k +++r++ r gCka++ k+ek+gkw+vt++++eHnH+ KZV52373.1 23 RFYNNYAQRVGFVVRIMQRRRSEVDGRTLARRLGCNKQGFSPNVKGKMGPGKKPRPNVREGCKATILFKMEKSGKWVVTRFVKEHNHP 110 5**********************************************9***************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.3E-24 | 23 | 110 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MEGSEVVEPY VGMEFESEDD AKRFYNNYAQ RVGFVVRIMQ RRRSEVDGRT LARRLGCNKQ 60 GFSPNVKGKM GPGKKPRPNV REGCKATILF KMEKSGKWVV TRFVKEHNHP SVATAHAYTM 120 VRDKDKKIQE LTQELLRQDQ LCADYRERLL NLLATIEKEA DHLSSRVLSV VESVRKAEAE 180 AFMMSCTDSL KM |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV52373.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011089611.1 | 1e-103 | protein FAR1-RELATED SEQUENCE 2 | ||||
Swissprot | Q9SZL8 | 9e-23 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2Z7CZ52 | 1e-141 | A0A2Z7CZ52_9LAMI; Uncharacterized protein | ||||
STRING | Migut.N00673.1.p | 1e-100 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA11602 | 20 | 25 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G12850.1 | 3e-60 | FAR1 family protein |
Publications ? help Back to Top | |||
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