PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV52186.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | MYB | ||||||||
Protein Properties | Length: 304aa MW: 34730.2 Da PI: 4.455 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.8 | 6.7e-15 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l +++++G +W++ +++ g+ R++k+c++rw +yl KZV52186.1 14 KGAWSEEEDNKLRAYIQRYGHWNWRLLPKYAGLARCGKSCRLRWVNYL 61 79******************99************************97 PP | |||||||
2 | Myb_DNA-binding | 51 | 3.3e-16 | 68 | 110 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g++++ E++l+++++++lG++ W++Ia++++ gRt++++k++w++ KZV52186.1 68 GNFSKHEEDLIIQLHNRLGNR-WSAIAAELP-GRTDNEIKNFWHT 110 89*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.518 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.92E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.9E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.3E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 5.7E-21 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.87E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 20.46 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 68 | 110 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.85E-11 | 69 | 112 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-23 | 69 | 115 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MVRPTYVDGN GMKKGAWSEE EDNKLRAYIQ RYGHWNWRLL PKYAGLARCG KSCRLRWVNY 60 LKPGTKHGNF SKHEEDLIIQ LHNRLGNRWS AIAAELPGRT DNEIKNFWHT NIKKSGKRNA 120 DSIQPAEIMI TEQIDCEIDQ VPVLDEEEKS PSQSNPINPT PQILIESNHL DFSSSDVFSP 180 GSVAQSSEIW WADSNSPASV AQSSDNLLAE LFFDDTSYNQ NVYDNFPPLQ EDEFFNSGLI 240 QEHHYGENLS IFDYSLPDSF DWNQADHVVD GSQSELTFFS SQVEPIGDIY DHCFQYLDNS 300 TGLL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-24 | 14 | 115 | 7 | 107 | B-MYB |
1gv2_A | 4e-24 | 14 | 115 | 4 | 104 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 1e-23 | 14 | 115 | 58 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-23 | 14 | 115 | 58 | 158 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 4e-24 | 14 | 115 | 4 | 104 | C-Myb DNA-Binding Domain |
1msf_C | 4e-24 | 14 | 115 | 4 | 104 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV52186.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0K1SB87 | 5e-70 | A0A0K1SB87_REHGL; R2R3-MYB protein | ||||
STRING | cassava4.1_023393m | 3e-67 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21440.1 | 8e-53 | MYB-like 102 |