PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV52186.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 304aa    MW: 34730.2 Da    PI: 4.455
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV52186.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.86.7e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l  +++++G  +W++ +++ g+ R++k+c++rw +yl
       KZV52186.1 14 KGAWSEEEDNKLRAYIQRYGHWNWRLLPKYAGLARCGKSCRLRWVNYL 61
                     79******************99************************97 PP

2Myb_DNA-binding513.3e-1668110246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g++++ E++l+++++++lG++ W++Ia++++ gRt++++k++w++
       KZV52186.1  68 GNFSKHEEDLIIQLHNRLGNR-WSAIAAELP-GRTDNEIKNFWHT 110
                      89*******************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.518961IPR017930Myb domain
SuperFamilySSF466892.92E-2911108IPR009057Homeodomain-like
SMARTSM007173.9E-111363IPR001005SANT/Myb domain
PfamPF002498.3E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-211568IPR009057Homeodomain-like
CDDcd001675.87E-101661No hitNo description
PROSITE profilePS5129420.4662116IPR017930Myb domain
SMARTSM007171.3E-1566114IPR001005SANT/Myb domain
PfamPF002491.2E-1468110IPR001005SANT/Myb domain
CDDcd001671.85E-1169112No hitNo description
Gene3DG3DSA:1.10.10.603.6E-2369115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MVRPTYVDGN GMKKGAWSEE EDNKLRAYIQ RYGHWNWRLL PKYAGLARCG KSCRLRWVNY  60
LKPGTKHGNF SKHEEDLIIQ LHNRLGNRWS AIAAELPGRT DNEIKNFWHT NIKKSGKRNA  120
DSIQPAEIMI TEQIDCEIDQ VPVLDEEEKS PSQSNPINPT PQILIESNHL DFSSSDVFSP  180
GSVAQSSEIW WADSNSPASV AQSSDNLLAE LFFDDTSYNQ NVYDNFPPLQ EDEFFNSGLI  240
QEHHYGENLS IFDYSLPDSF DWNQADHVVD GSQSELTFFS SQVEPIGDIY DHCFQYLDNS  300
TGLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-24141157107B-MYB
1gv2_A4e-24141154104MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-231411558158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-231411558158MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-24141154104C-Myb DNA-Binding Domain
1msf_C4e-24141154104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV52186.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0K1SB875e-70A0A0K1SB87_REHGL; R2R3-MYB protein
STRINGcassava4.1_023393m3e-67(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.18e-53MYB-like 102