PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | KZV52110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 890aa MW: 98711.5 Da PI: 7.5713 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.1 | 2e-18 | 155 | 202 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt Ed +lvd+v+++G g+W++I ++ g+ R++k+c++rw ++l KZV52110.1 155 KGPWTTAEDSILVDYVTKHGEGNWNAIQKHTGLARCGKSCRLRWANHL 202 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 49.2 | 1.2e-15 | 208 | 251 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T eE+ l++++++++G++ W++ a++++ gRt++++k++w++ KZV52110.1 208 KGAFTLEEENLIIELHAKMGNK-WAKMAAELP-GRTDNEIKNYWNT 251 799*******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.479 | 150 | 202 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.59E-30 | 152 | 249 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.0E-13 | 154 | 204 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.8E-15 | 155 | 202 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-23 | 156 | 209 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.04E-11 | 157 | 202 | No hit | No description |
PROSITE profile | PS51294 | 25.434 | 203 | 257 | IPR017930 | Myb domain |
SMART | SM00717 | 2.0E-16 | 207 | 255 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.5E-15 | 208 | 251 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.08E-11 | 210 | 251 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 6.9E-25 | 210 | 256 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 890 aa Download sequence Send to blast |
MSFVKANVIY DCYESIIFDD QNSPKLSDNG KADIGFSKPE NSKPRWLKNR LDKDKAKSGR 60 KPFVPNQPWR SSTKIKSGWK KVQQKRDLSG HKMKSKLNIP HNYAQTLKDT YTGKTVKVIS 120 MTSDSEDMMP MNGEDSPLED AIDGGNVSGN VSLKKGPWTT AEDSILVDYV TKHGEGNWNA 180 IQKHTGLARC GKSCRLRWAN HLRPDLKKGA FTLEEENLII ELHAKMGNKW AKMAAELPGR 240 TDNEIKNYWN TRVKRRQRAG LPIYPPDLHV QSFNENQPDD DSNSFSSMEA PHFDLLPYNN 300 LEIPEFKGFD LNQQFYSGDS KLAGDPYLTY PNESCFPSSH SPKHPERPEY FYHGSNPVVS 360 NVTPDFSQHH YDGYLPTAHS FQFSPAYDYS SNYYNGSSSS AFPGSHVILN GKPSSSEPAW 420 AMKLELPSLQ TEMGSWGSPS TPLPYLESVD TLIQTPPNEL CTPACSLSPG NSGLLDAVLY 480 ESQIMKISNT NSHQQTSLAS GLDDDIVDTS SQDPQTGWEP YVEPVSPLGH SSPAMFTEST 540 PSNGNSSQFI EVTPAAAPPR RKLRAAAART SPINTHSRAT ICACCASSIA RPVASSRKPS 600 SSSTPPCIEH RPPSNERRAT SGATLCNACE SGGRIARPTR PRHATSAAGA RPRSATSAAG 660 ARPRRATSFA THRQEKPSHA RPACMYLARS CARSKERSKD RRMRTRSDRR PNRKNDRKVL 720 VAEESTKSWV DTDSESSSSS SSSSDSEQEE VHCFMADQTS DDEVFDFSNV EFTREDLVSA 780 LNDMVKDDNS EGETSTQSQP AYDKFNKMSF VKANVIYDCF ESITFDDQNS PKLNDNGKAG 840 IGFSKPVLVC EKQRVERFIV TISHTDSLAH FSLNRDVNQV LSEQPWAGRV |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-30 | 153 | 256 | 5 | 107 | B-MYB |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | KZV52110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2Z7CYG1 | 0.0 | A0A2Z7CYG1_9LAMI; Transcription factor GAMYB-like |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2021 | 23 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G11440.1 | 1e-76 | myb domain protein 65 |