PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV51983.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

Protein Properties

Length: 1571aa MW: 174317 Da PI: 5.8487

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV51983.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.6	4e-17	1041	1140	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+l+ sd+++ grlvlpkk+ae++ + ++e++ l + d +g++W +++++ +++s++yvl+ G ++ +L++gD+v+F++ + +++lv KZV51983.1 1041 FEKTLSASDAGRIGRLVLPKKCAEAYfpPIAQPEGVPLEVLDVKGKEWVFQFRFwpNNNSRMYVLE-GITPCIQSLKLQAGDVVTFSRLE-PGGKLV 1135 99************************666678899***********99899999999.*******************665.778788 PP EEEE- CS B3 94 vkvfr 98 ++ ++ KZV51983.1 1136 MGGRK 1140 77765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF50978	1.83E-16	20	119	IPR017986	WD40-repeat-containing domain
Gene3D	G3DSA:2.130.10.10	2.0E-16	24	115	IPR015943	WD40/YVTN repeat-like-containing domain
Pfam	PF12894	3.8E-27	28	113	IPR024977	Anaphase-promoting complex subunit 4, WD40 domain
PROSITE profile	PS50294	8.677	57	119	IPR017986	WD40-repeat-containing domain
SuperFamily	SSF50978	1.83E-16	184	212	IPR017986	WD40-repeat-containing domain
Gene3D	G3DSA:2.130.10.10	2.0E-16	200	213	IPR015943	WD40/YVTN repeat-like-containing domain
Pfam	PF12896	5.2E-58	290	492	IPR024790	Anaphase-promoting complex subunit 4 long domain
Gene3D	G3DSA:2.40.330.10	3.3E-29	1037	1143	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	5.36E-20	1038	1138	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.52E-22	1039	1140	No hit	No description
PROSITE profile	PS50863	10.532	1041	1142	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.7E-14	1041	1138	IPR003340	B3 DNA binding domain
SMART	SM01019	3.7E-21	1041	1142	IPR003340	B3 DNA binding domain
PROSITE profile	PS51050	13.508	1289	1339	IPR011124	Zinc finger, CW-type
Pfam	PF07496	1.5E-10	1294	1336	IPR011124	Zinc finger, CW-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1571 aa Download sequence Send to blast
MKSVGSHGAV PFQLQFDKPI ASQIKIAEWN PEKDLLALVT EDSKLLLHRF NWQRLWITST 60 GKCITSICWR PDGKAIAVGL EDGAVSLHDV ENGKLLRSMK FHSASIVCLS WEEDREKVAV 120 QNLALSVMWD MSWYGVDLVY CLMNQDGNHN FRYEDRTTRF FPHAPRSPCI PGLVPGDSGS 180 MDEHDDSFQE LFDSSHQQFS ILCSGDKDGN ICFSIFGIFR VGRINIHNLA FDSPVVGNNM 240 KYQLLNASIC KVALANDLSH IIILCSGALT GTDIEARDTQ KSQKELPGFH CLVLDSAIFS 300 ERKNELHQVA QQASNVEHLI EVIRTSLSVM TKQWSDAMRT YHEKFNGLSS LIIDNGLDST 360 PQEEFLSLLG GARTSPAVHQ FLVNTLGEMG LKRVAKLVSG AGKEVQTVVL DHLQPAADIV 420 GFRIGELRGL SKWRARYQGI GLDENLIDNA MEKAGMFLVQ VQRFIRVLSS VVQQFSNFFS 480 WLLKSVKILM SEPSDQLLPF NSELIIIFLR FLYDRDPVGQ LLEFDHNIEV DLERQLRVRE 540 LAIFGGFSDS EFLKRTLASE FQQMEYCFKE ALEMPLATVS KRILCKDVLP LFPLESPTSY 600 KSCIPASVSY FQEISHLVMN RRNVHTSLTD YMSFIIPDGT FPNITNCIGI CRGIMHDLDI 660 LKDNHTPLEA ALLRAPDGYG CADISLYREA QLVLLLNEVT STSESSGNAC MMIIQAASLP 720 FVRISRFSSP RSWNFHELQS YSRTVIDLQL ENEKVREIPH SVMAPLAVSA SRGVACVFAA 780 KKRALVYILE EDEDELTDTD SAYEEGKFCD AFHSSTSGWR CCESCGKTPN PAWPPPSQVG 840 PSQLEKTEDF SWNTSSSFVG SGPVPWRIAP SLFKESNIQS DAHTKIPFEI DVSGGIDLFG 900 TSERLLAGSP EKKQEFSDER CFNGKFRVGP FDALQNGHAA LNPKDQPLPS INIQSTILPK 960 NDSSNFSVIT ASSSKTELDD TSQLSANFST SQTLSVPVGK QVGTHYRMDG ETQVRNGKVL 1020 GDSRGRNQLL PRSKSVITPL FEKTLSASDA GRIGRLVLPK KCAEAYFPPI AQPEGVPLEV 1080 LDVKGKEWVF QFRFWPNNNS RMYVLEGITP CIQSLKLQAG DVVTFSRLEP GGKLVMGGRK 1140 SSSVPSSDQG DGAVIKGSNS LIPESCQAKN KCVEGIPVIG YMKGKSPSFF QPISHVSKAD 1200 IGSISSEIHE TKPPYNSKGN GSILFSKCKR PRTENDIALN LSMDEAQGLI RPAAKIVASV 1260 FVVEGCEIEE FEDTAPVIGR PTIPATDAFG KQMQWVQCED CFKWRKVPQD ALLPSEWICS 1320 ENVWDLDRSR CSDAEELAVG KLQVILPAIK KDSSKRREIT TKDAEMFATQ ERHDTRVNLA 1380 IQADDEGISA SADSRSNHPS EKSPKHKQSC DCAICSSLKH RFRTLMDKYV KQQLEEVGES 1440 ISQKLNQQQL PEQVHNVETQ AVPDTGNITS TWGEERKIVC LDYHNMQKSS SSPLKGQIDL 1500 NIQPEREEDV SPVSESGTGK QLHPHATEKL FMQQMPSGSG IGNLASTRIL QDGIGANLLS 1560 CLTVDGGIQE N

Sequence ? help Back to Top

Protein Sequence Length: 1571 aa Download sequence Send to blast

MKSVGSHGAV PFQLQFDKPI ASQIKIAEWN PEKDLLALVT EDSKLLLHRF NWQRLWITST  60
GKCITSICWR PDGKAIAVGL EDGAVSLHDV ENGKLLRSMK FHSASIVCLS WEEDREKVAV  120
QNLALSVMWD MSWYGVDLVY CLMNQDGNHN FRYEDRTTRF FPHAPRSPCI PGLVPGDSGS  180
MDEHDDSFQE LFDSSHQQFS ILCSGDKDGN ICFSIFGIFR VGRINIHNLA FDSPVVGNNM  240
KYQLLNASIC KVALANDLSH IIILCSGALT GTDIEARDTQ KSQKELPGFH CLVLDSAIFS  300
ERKNELHQVA QQASNVEHLI EVIRTSLSVM TKQWSDAMRT YHEKFNGLSS LIIDNGLDST  360
PQEEFLSLLG GARTSPAVHQ FLVNTLGEMG LKRVAKLVSG AGKEVQTVVL DHLQPAADIV  420
GFRIGELRGL SKWRARYQGI GLDENLIDNA MEKAGMFLVQ VQRFIRVLSS VVQQFSNFFS  480
WLLKSVKILM SEPSDQLLPF NSELIIIFLR FLYDRDPVGQ LLEFDHNIEV DLERQLRVRE  540
LAIFGGFSDS EFLKRTLASE FQQMEYCFKE ALEMPLATVS KRILCKDVLP LFPLESPTSY  600
KSCIPASVSY FQEISHLVMN RRNVHTSLTD YMSFIIPDGT FPNITNCIGI CRGIMHDLDI  660
LKDNHTPLEA ALLRAPDGYG CADISLYREA QLVLLLNEVT STSESSGNAC MMIIQAASLP  720
FVRISRFSSP RSWNFHELQS YSRTVIDLQL ENEKVREIPH SVMAPLAVSA SRGVACVFAA  780
KKRALVYILE EDEDELTDTD SAYEEGKFCD AFHSSTSGWR CCESCGKTPN PAWPPPSQVG  840
PSQLEKTEDF SWNTSSSFVG SGPVPWRIAP SLFKESNIQS DAHTKIPFEI DVSGGIDLFG  900
TSERLLAGSP EKKQEFSDER CFNGKFRVGP FDALQNGHAA LNPKDQPLPS INIQSTILPK  960
NDSSNFSVIT ASSSKTELDD TSQLSANFST SQTLSVPVGK QVGTHYRMDG ETQVRNGKVL  1020
GDSRGRNQLL PRSKSVITPL FEKTLSASDA GRIGRLVLPK KCAEAYFPPI AQPEGVPLEV  1080
LDVKGKEWVF QFRFWPNNNS RMYVLEGITP CIQSLKLQAG DVVTFSRLEP GGKLVMGGRK  1140
SSSVPSSDQG DGAVIKGSNS LIPESCQAKN KCVEGIPVIG YMKGKSPSFF QPISHVSKAD  1200
IGSISSEIHE TKPPYNSKGN GSILFSKCKR PRTENDIALN LSMDEAQGLI RPAAKIVASV  1260
FVVEGCEIEE FEDTAPVIGR PTIPATDAFG KQMQWVQCED CFKWRKVPQD ALLPSEWICS  1320
ENVWDLDRSR CSDAEELAVG KLQVILPAIK KDSSKRREIT TKDAEMFATQ ERHDTRVNLA  1380
IQADDEGISA SADSRSNHPS EKSPKHKQSC DCAICSSLKH RFRTLMDKYV KQQLEEVGES  1440
ISQKLNQQQL PEQVHNVETQ AVPDTGNITS TWGEERKIVC LDYHNMQKSS SSPLKGQIDL  1500
NIQPEREEDV SPVSESGTGK QLHPHATEKL FMQQMPSGSG IGNLASTRIL QDGIGANLLS  1560
CLTVDGGIQE N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	1e-56	1037	1144	20	127	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV51983.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086112.1	0.0	anaphase-promoting complex subunit 4
Swissprot	O65418	0.0	APC4_ARATH; Anaphase-promoting complex subunit 4
TrEMBL	A0A2Z7CYT9	0.0	A0A2Z7CYT9_9LAMI; Uncharacterized protein
STRING	Migut.E00415.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	5e-93	high-level expression of sugar-inducible gene 2

Publications ? help Back to Top
Capron A,Okrész L,Genschik P First glance at the plant APC/C, a highly conserved ubiquitin-protein ligase. Trends Plant Sci., 2003. 8(2): p. 83-9 [PMID:12597875] Wang Y, et al. The Arabidopsis APC4 subunit of the anaphase-promoting complex/cyclosome (APC/C) is critical for both female gametogenesis and embryogenesis. Plant J., 2012. 69(2): p. 227-40 [PMID:21910774] Wang Y, et al. The Arabidopsis anaphase-promoting complex/cyclosome subunit 1 is critical for both female gametogenesis and embryogenesis(F). J Integr Plant Biol, 2013. 55(1): p. 64-74 [PMID:23206231] Guo L, et al. The anaphase-promoting complex initiates zygote division in Arabidopsis through degradation of cyclin B1. Plant J., 2016. 86(2): p. 161-74 [PMID:26952278] Guo L,Jiang L,Lu XL,Liu CM ANAPHASE PROMOTING COMPLEX/CYCLOSOME-mediated cyclin B1 degradation is critical for cell cycle synchronization in syncytial endosperms. J Integr Plant Biol, 2018. 60(6): p. 448-454 [PMID:29424475]