PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV51914.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ERF
Protein Properties Length: 159aa    MW: 17645.8 Da    PI: 10.161
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV51914.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.23.5e-1783134256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                 +y+GVr+++ +g+++AeIrdp+ ng  +r++lg++  + +Aa+a++ a+ +++g+
  KZV51914.1  83 RYRGVRRRP-WGKYAAEIRDPNRNG--RRVWLGTYYNEIDAARAYDCAAFRMRGN 134
                 7********.**********96665..**********99**************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-3183147IPR001471AP2/ERF domain
SuperFamilySSF541715.95E-2283143IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.2E-2983142IPR001471AP2/ERF domain
PfamPF008471.0E-1183133IPR001471AP2/ERF domain
PROSITE profilePS5103223.69683141IPR001471AP2/ERF domain
PRINTSPR003674.2E-138495IPR001471AP2/ERF domain
CDDcd000185.57E-2091141No hitNo description
PRINTSPR003674.2E-13123143IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:1902074Biological Processresponse to salt
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MATSDSSSTL DLIRQHLLGD FTSDLNPIDF TSSVPDSSSD LSQPDFLIAP YPKRPSDLSA  60
MAAKAVPETT PVRPDAVAAV GRRYRGVRRR PWGKYAAEIR DPNRNGRRVW LGTYYNEIDA  120
ARAYDCAAFR MRGNRAILNF PMEAGTSGPP ENTVRKGRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-2779142164ATERF1
3gcc_A5e-2779142164ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV51914.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021905462.13e-45ethylene-responsive transcription factor ERF106
SwissprotQ8VY905e-36EF105_ARATH; Ethylene-responsive transcription factor ERF105
TrEMBLA0A2Z7D4J21e-112A0A2Z7D4J2_9LAMI; DNA binding protein
STRINGevm.model.supercontig_13.2532e-45(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07580.11e-28ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Moore M,Vogel M,Dietz K
    The acclimation response to high light is initiated within seconds as indicated by upregulation of AP2/ERF transcription factor network in Arabidopsis thaliana.
    Plant Signal Behav, 2014. 9(10): p. 976479
    [PMID:25482793]
  3. Bolt S,Zuther E,Zintl S,Hincha DK,Schmülling T
    ERF105 is a transcription factor gene of Arabidopsis thaliana required for freezing tolerance and cold acclimation.
    Plant Cell Environ., 2017. 40(1): p. 108-120
    [PMID:27723941]
  4. König K,Vaseghi MJ,Dreyer A,Dietz KJ
    The significance of glutathione and ascorbate in modulating the retrograde high light response in Arabidopsis thaliana leaves.
    Physiol Plant, 2018. 162(3): p. 262-273
    [PMID:28984358]