PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV51802.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

GRAS

Protein Properties

Length: 685aa MW: 77840.2 Da PI: 6.6964

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV51802.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	376.8	2.8e-115	312	683	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lL++cA+av+++d+++a++l++++++++sp gd qRla+yf+ +L+arla+++s++ +al ++t+ ++ l+a+ ++ sP+ k+++++ N KZV51802.1 312 LRTLLISCAQAVAADDHRNANELIKQIRQHSSPFGDGSQRLAHYFADGLEARLAGTGSQIHNALVNRRTT---AADYLKAYYTYLASSPFRKITNFASN 407 6789**********************************************************999998...9********************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 ++I +++ rvH+iDf+i +G+QWp+++q +a+R++gpp++RiTg++ p++g +e+++etg rLa++Ae+++vpfe+n+ +a+++e++++e+L++ KZV51802.1 408 KTIITKSQKAMRVHVIDFGILYGFQWPTFIQRIAARKGGPPKVRITGIDFPQPGfrPAEKIQETGCRLAHYAEKFNVPFEYNA-IAQKWETIRMEDLKI 505 *************************************************9*************************.7********** PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 +++E ++V + ++ +lldesv es+r++vL+l+++++P ++++ + ++++ F++rf e l ++salfd+le+++pre++er +E+ ++g+e+ KZV51802.1 506 DKDEFVVVTCLYRGRNLLDESVVAESARTAVLNLIRKINPSLFIHGVLNGAYSTPFFVTRFREVLFHFSALFDMLETNIPREKQERLLIEKDIFGKEAL 604 *********************************************************************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 nv+aceg er+er et+++W+ r +aGF +vp++ +++k a + +r+++ + + ++e+ ++l++gWk+r ++++S+W+ KZV51802.1 605 NVIACEGWERVERPETYKQWQVRDLRAGFMQVPFEREIMKGAIYKVRTCYHKDFVIDEDGHWLLMGWKGRIIYAISCWK 683 **********************************************889***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	64.645	286	663	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.6E-113	312	683	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence Send to blast
MSSSCVDIED EYQDDCDFSD AILRYIDQML MEEDMEEKTY MLQESLDLQA QEKSFYDVIG 60 KKYPPSPQPE SALFSQFGEI PDAYSYVNPH SLSHSDSIGN GNLSDVVNPR WINSTLYRDA 120 SFVGCIPTDH TLNSSASKSN SLHNVADIFL ESPISPLQMH EMHRGSQSEE ANKFLPGENK 180 FLISVDVNGF LARNSIEESV KGVIEAGKKD EVEECSPSQS KGKKNGHNFD SDFEERNSKL 240 PAIYAESDVP MEEFDNVLLI SSGEHGEKFA AYRADLQYAA SKSMQCSGRP KGSGGVKRRG 300 KKQTRKKQVI DLRTLLISCA QAVAADDHRN ANELIKQIRQ HSSPFGDGSQ RLAHYFADGL 360 EARLAGTGSQ IHNALVNRRT TAADYLKAYY TYLASSPFRK ITNFASNKTI ITKSQKAMRV 420 HVIDFGILYG FQWPTFIQRI AARKGGPPKV RITGIDFPQP GFRPAEKIQE TGCRLAHYAE 480 KFNVPFEYNA IAQKWETIRM EDLKIDKDEF VVVTCLYRGR NLLDESVVAE SARTAVLNLI 540 RKINPSLFIH GVLNGAYSTP FFVTRFREVL FHFSALFDML ETNIPREKQE RLLIEKDIFG 600 KEALNVIACE GWERVERPET YKQWQVRDLR AGFMQVPFER EIMKGAIYKV RTCYHKDFVI 660 DEDGHWLLMG WKGRIIYAIS CWKPI

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence Send to blast

MSSSCVDIED EYQDDCDFSD AILRYIDQML MEEDMEEKTY MLQESLDLQA QEKSFYDVIG  60
KKYPPSPQPE SALFSQFGEI PDAYSYVNPH SLSHSDSIGN GNLSDVVNPR WINSTLYRDA  120
SFVGCIPTDH TLNSSASKSN SLHNVADIFL ESPISPLQMH EMHRGSQSEE ANKFLPGENK  180
FLISVDVNGF LARNSIEESV KGVIEAGKKD EVEECSPSQS KGKKNGHNFD SDFEERNSKL  240
PAIYAESDVP MEEFDNVLLI SSGEHGEKFA AYRADLQYAA SKSMQCSGRP KGSGGVKRRG  300
KKQTRKKQVI DLRTLLISCA QAVAADDHRN ANELIKQIRQ HSSPFGDGSQ RLAHYFADGL  360
EARLAGTGSQ IHNALVNRRT TAADYLKAYY TYLASSPFRK ITNFASNKTI ITKSQKAMRV  420
HVIDFGILYG FQWPTFIQRI AARKGGPPKV RITGIDFPQP GFRPAEKIQE TGCRLAHYAE  480
KFNVPFEYNA IAQKWETIRM EDLKIDKDEF VVVTCLYRGR NLLDESVVAE SARTAVLNLI  540
RKINPSLFIH GVLNGAYSTP FFVTRFREVL FHFSALFDML ETNIPREKQE RLLIEKDIFG  600
KEALNVIACE GWERVERPET YKQWQVRDLR AGFMQVPFER EIMKGAIYKV RTCYHKDFVI  660
DEDGHWLLMG WKGRIIYAIS CWKPI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	3e-51	295	684	1	379	Protein SCARECROW
5b3h_D	3e-51	295	684	1	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV51802.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077642.1	0.0	scarecrow-like protein 9
Swissprot	O80933	0.0	SCL9_ARATH; Scarecrow-like protein 9
TrEMBL	A0A2Z7CXG2	0.0	A0A2Z7CXG2_9LAMI; Scarecrow-like protein 9
STRING	Migut.L01952.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37650.1	0.0	GRAS family protein