PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV51754.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 495aa    MW: 54749.6 Da    PI: 9.5958
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV51754.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.6e-056890123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C++C+k F r  nL+ H r H
  KZV51754.1 68 FFCEICNKGFQRDQNLQLHRRGH 90
                67*******************88 PP
2zf-C2H212.80.00037145167123
                 EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                 +kC++C+k +  +s+ k H +t+
  KZV51754.1 145 WKCEKCSKKYAVQSDWKAHSKTC 167
                 58*****************9998 PP
3zf-C2H211.90.00071175193523
                 TTTEEESSHHHHHHHHHHT CS
     zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                 dCg++Fsrk+++ +H   +
  KZV51754.1 175 DCGTVFSRKDSFITHRAFC 193
                 8**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576674.0E-76790No hitNo description
Gene3DG3DSA:3.30.160.604.7E-56790IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.726890IPR007087Zinc finger, C2H2
SMARTSM003550.0446890IPR015880Zinc finger, C2H2-like
PfamPF121712.5E-56890IPR022755Zinc finger, double-stranded RNA binding
PROSITE patternPS0002807090IPR007087Zinc finger, C2H2
SMARTSM00355110110140IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4133166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.0E-7140165No hitNo description
SMARTSM00355140145165IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MMYGEVFSAI NSASAKLFHE EPEELSPNPS SISKPIVAKK RRNLPGTPDP DSEVIALSPK  60
TLMATNRFFC EICNKGFQRD QNLQLHRRGH NLPWKLKQRA NKDQIKKKVY ICPEKTCVHH  120
DPARALGDLT GIKKHFSRKH GEKKWKCEKC SKKYAVQSDW KAHSKTCGTR EYKCDCGTVF  180
SRKDSFITHR AFCDALAVEN SRISIGCGVG NDQNFRNDLK NSNLTNIQPN LPTGFTTSPG  240
GFRPDFASVA AGNSLFMDQD QQKPRLPLWL DHNDNPNLFM PSSSTNFPEM MSITSGDIFG  300
LNSSMGNYGF KQEPVILNNE KSNTMVSNSL HSLYSDQKQI NQSNYSSSST SATALLQKAA  360
QMGTSKSNPQ FFGNTTGVML SSSSPPRPSQ NRSELHRVFC KQPENAIASA MDFNASTASN  420
TFNNSQASII QTQGTSSMIL TTGHLHGVGH SSLTRDFLGM GGYGGDVVPF LPQELANFSS  480
MKPDMRMSRS ANNNQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-36141204366Zinc finger protein JACKDAW
5b3h_F9e-36141204366Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV51754.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094681.10.0protein indeterminate-domain 9
TrEMBLA0A2Z7D4330.0A0A2Z7D433_9LAMI; Uncharacterized protein
STRINGPOPTR_0006s13130.11e-168(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03150.18e-98C2H2-like zinc finger protein