PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV51696.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 411aa    MW: 44358.6 Da    PI: 6.5956
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV51696.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-164590147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg+W++eEd  l  +v ++G+++W++Iar ++ gR++k+c++rw + 
       KZV51696.1 45 RGPWSQEEDAVLSGLVSKFGPRNWSLIARGIP-GRSGKSCRLRWCNQ 90
                     89******************************.***********985 PP
2Myb_DNA-binding54.72.3e-1797140146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++T eEd  +++a+  +G++ W++Ia+ ++ gRt++ +k++w++
       KZV51696.1  97 RKPFTDEEDRTIIEAHSVHGNK-WASIAKLLP-GRTDNAIKNHWNS 140
                      789*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.27E-3043138IPR009057Homeodomain-like
PROSITE profilePS5129417.5744391IPR017930Myb domain
SMARTSM007172.3E-134493IPR001005SANT/Myb domain
PfamPF002491.7E-154590IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.8E-254698IPR009057Homeodomain-like
CDDcd001675.47E-134789No hitNo description
PROSITE profilePS5129426.69192146IPR017930Myb domain
SMARTSM007176.3E-1696144IPR001005SANT/Myb domain
PfamPF002491.0E-1597140IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-2499145IPR009057Homeodomain-like
CDDcd001671.57E-1299142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MTKRPEMNEL PESKQGVDSA EDDVAAVDDG AVEAGSGGGV GQKVRGPWSQ EEDAVLSGLV  60
SKFGPRNWSL IARGIPGRSG KSCRLRWCNQ LDPSVTRKPF TDEEDRTIIE AHSVHGNKWA  120
SIAKLLPGRT DNAIKNHWNS SLRRKSVSLE CFKPPSDQIL DDSSIGWTKA DSEEPSAGTV  180
NLIKSSVNVD TSLMEIQQKQ SKYRAQTTVN CSFLQQNAPT ISGGNPKSSR SLEIVDDESM  240
VDTKVPFDDK TQTTANHGIG LQNPPPSDPS AESNISKIAR PVGKFGAFNV YNSSSHDAIS  300
RKAPMQGLLI QDSKPDFKMC RVLDGTCNVS VIPTRCGHGC CAASGVHSSH KSLLGPEFVE  360
FEELPTFSSE EFASIALDLN NIAWIRSGLK NAGKAPGDAN VQRHVQASPC M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-40441453104C-Myb DNA-Binding Domain
1msf_C1e-40441453104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV51696.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076754.11e-133transcription factor MYB25
TrEMBLA0A2Z7D3F90.0A0A2Z7D3F9_9LAMI; Uncharacterized protein
STRINGXP_009615291.11e-112(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA26112454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09230.11e-74myb domain protein 1