PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV51468.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 280aa    MW: 31218.4 Da    PI: 9.2217
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV51468.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.31.7e-131461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+t Ed  l d + + G g+W++ +++ g+ R++k+c++rw +yl
       KZV51468.1 14 KGPWSTKEDTVLTDFILENGEGQWRSLPKRAGLLRCGKSCRLRWMNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding48.22.4e-1567111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ +++E++l+v+++ +lG++ W++Ia +++ gRt++++k++w++ 
       KZV51468.1  67 RGNISQDEEDLIVRLHGLLGNR-WSLIAGRLP-GRTDNEIKNYWNTI 111
                      7899******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.98961IPR017930Myb domain
SuperFamilySSF466891.21E-2611108IPR009057Homeodomain-like
SMARTSM007178.1E-91363IPR001005SANT/Myb domain
PfamPF002492.0E-111461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-191568IPR009057Homeodomain-like
CDDcd001671.31E-61661No hitNo description
PROSITE profilePS5129423.66262116IPR017930Myb domain
SMARTSM007173.7E-1466114IPR001005SANT/Myb domain
PfamPF002491.7E-1367111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.0E-2369117IPR009057Homeodomain-like
CDDcd001671.78E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MGRSPCCSKV GMRKGPWSTK EDTVLTDFIL ENGEGQWRSL PKRAGLLRCG KSCRLRWMNY  60
LRPGIKRGNI SQDEEDLIVR LHGLLGNRWS LIAGRLPGRT DNEIKNYWNT ILLRKLKNAG  120
FHPTAHKYLR KPRKINKSPA ARDDGDGDTP GDERKMNKNQ LTAVNTQPYD NDDAPKTKVY  180
CPKPIRVSPS FSRTSSFESL VSGSSSIHGG NAAGKGGGRD AELPCVPGVW PIFELEDANF  240
GVSGGDDFLR EFGLLPEPRS ASCDDLTMLH QVYDEYLQLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-24121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV51468.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011070362.11e-114transcription repressor MYB5-like
TrEMBLA0A2Z7CXJ30.0A0A2Z7CXJ3_9LAMI; Myb-related protein 330-like
STRINGMigut.O00736.1.p3e-87(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.17e-65myb domain protein 5