PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV51439.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GATA
Protein Properties Length: 322aa    MW: 35331.1 Da    PI: 6.499
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV51439.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.18.7e-17212246135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C +C + kTp+WR gp g+ktLCnaCG+++++ +l
  KZV51439.1 212 CLHCASEKTPQWRTGPMGPKTLCNACGVRFKSGRL 246
                 99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.3E-7610302IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011412.321206242IPR000679Zinc finger, GATA-type
SMARTSM004013.3E-16206256IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.61E-14208270No hitNo description
Gene3DG3DSA:3.30.50.101.6E-13210244IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.89E-12211258No hitNo description
PfamPF003201.3E-14212246IPR000679Zinc finger, GATA-type
PROSITE patternPS003440212237IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MEYFVGNYAE FSSVENGNLS NNNNNGVHFM VDDLLDFSKA DETMNDAFFD GLGGNSGDSS  60
TVTAVDSCNS SVSCGDGQFN GNASCRSFNE SQFCSNELCV PYDDLAELEW LSNFVEESFS  120
TEDLHFIPTN TTAPAAKAAK STATDTSSSV TTTHSPPIFS SDVSVPGKAR SKRSRAAPCD  180
WSSRLLLVSP SPNLQTTPSI KKQSAETPGR KCLHCASEKT PQWRTGPMGP KTLCNACGVR  240
FKSGRLVPEY RPAASPTFVT AKHSNSHRKV MELRRQKDAQ RQQHQNQNLL SQVPVFNVSN  300
GCDEFFIHHR DTLNGRDFMH MI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV51439.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022851153.11e-155GATA transcription factor 9-like
SwissprotP697814e-75GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A2Z7D3M50.0A0A2Z7D3M5_9LAMI; GATA transcription factor
STRINGMigut.I00908.1.p1e-149(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19192363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.11e-74GATA transcription factor 9
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]