PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV51240.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GRAS
Protein Properties Length: 550aa    MW: 61012.6 Da    PI: 5.8776
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV51240.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4011.2e-1221705501374
        GRAS   1 lvelLlecAeavssgdle..........laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                 l++lL++cAe vs+ d +          +a+ lL  l  ++s +gdp+qRl ay++e+L+arl++s+s +yk+l+++e +   sse ++++++++e++P
  KZV51240.1 170 LKQLLVACAETVSEADSNssedrrfafsAAEVLLDMLGRRVSVYGDPLQRLGAYVLEGLKARLLSSGSIIYKKLNCNEPA---SSELMSYMHVLYEICP 265
                 6799********996655455666777799*************************************************9...99************** PP

        GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                 ++kf+++ aN  I ea+ +e+r+H+iDf+i qG QW++++q+L+sRp+gpp lRiTgv++ es   +   le + +rL ++Ae++gvpfef+  +  + 
  KZV51240.1 266 YYKFAYVSANAVIREAMVNESRIHVIDFQIAQGSQWVSFIQSLSSRPGGPPYLRITGVDDLESAhaRGGGLELVCQRLGSVAEACGVPFEFHG-AGMSG 363
                 ************************************************************9988889999***********************.88899 PP

        GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                  ++++e+L+v++gE+laVn+ + lh+++desvs++++rd++L+lvk+lsP++v+++eqe+++n++sF++rfle+l++y+a+f+s++a   r++++ri+ 
  KZV51240.1 364 CEVHYENLKVRKGESLAVNFPYILHHMPDESVSTTNHRDRLLRLVKNLSPRIVTLSEQESNTNTSSFFQRFLETLDFYTAIFESIDAVRLRDDRQRIST 462
                 99***********************************************************************************99989********* PP

        GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 E++++g++ivn++aceg +r erhe l+kWr rl++aGF+pvpl++++ ++a+ +lr ++++ yr+ e +g+l+lgWk+r+L++ SaWr
  KZV51240.1 463 EEHCVGKDIVNIIACEGIDRLERHELLGKWRLRLTMAGFSPVPLNSSVSNTARDVLRDYSKN-YRIAEANGALYLGWKNRALYTSSAWR 550
                 ************************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.665144531IPR005202Transcription factor GRAS
PfamPF035144.2E-120170550IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MKESWALQAS AKSSIVDNQS MEQVKPSRVS TFQVLNDDPT QSKSRGIDVS SPAYTEEFFT  60
LESTPVTGDP ISNSSAAVSI SSNRSDLSSH CSQSYASDLH HSCDYTCDSS FDSSAVIDNE  120
AKLMHALWML RNDLLGPESG DSGSFSGVTT HPLSSARYNK ILEMAAPMDL KQLLVACAET  180
VSEADSNSSE DRRFAFSAAE VLLDMLGRRV SVYGDPLQRL GAYVLEGLKA RLLSSGSIIY  240
KKLNCNEPAS SELMSYMHVL YEICPYYKFA YVSANAVIRE AMVNESRIHV IDFQIAQGSQ  300
WVSFIQSLSS RPGGPPYLRI TGVDDLESAH ARGGGLELVC QRLGSVAEAC GVPFEFHGAG  360
MSGCEVHYEN LKVRKGESLA VNFPYILHHM PDESVSTTNH RDRLLRLVKN LSPRIVTLSE  420
QESNTNTSSF FQRFLETLDF YTAIFESIDA VRLRDDRQRI STEEHCVGKD IVNIIACEGI  480
DRLERHELLG KWRLRLTMAG FSPVPLNSSV SNTARDVLRD YSKNYRIAEA NGALYLGWKN  540
RALYTSSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-5421455037375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV51240.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012849068.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A2Z7CVZ80.0A0A2Z7CVZ8_9LAMI; Scarecrow-like protein 13-like
STRINGMigut.M01421.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68124111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13