PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV51189.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 274aa    MW: 31382.9 Da    PI: 6.4252
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV51189.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.52.4e-162263446
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     W +eEde+l  +v++ G+++W++Ia+ +  gRt+k+c++rw +
       KZV51189.1 22 WRPEEDEKLTSLVQKIGPNNWELIAKQFR-GRTGKSCRLRWVN 63
                     *****************************.***********88 PP
2Myb_DNA-binding41.43.2e-1373115347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++T eE  +l+++++ +G++ W+ I++++  +Rt++q+k+ ++ +
       KZV51189.1  73 PFTVEEKRKLLELHQFYGNK-WAVISKHFD-RRTDNQVKNQYHVL 115
                      89******************.*********.**********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.8511469IPR017930Myb domain
SuperFamilySSF466891.08E-2918112IPR009057Homeodomain-like
SMARTSM007175.6E-131867IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-252172IPR009057Homeodomain-like
CDDcd001673.96E-142263No hitNo description
PfamPF002495.3E-152264IPR001005SANT/Myb domain
SMARTSM007178.7E-1270118IPR001005SANT/Myb domain
PROSITE profilePS5129412.52270120IPR017930Myb domain
PfamPF002491.1E-1172114IPR001005SANT/Myb domain
CDDcd001672.78E-1073116No hitNo description
Gene3DG3DSA:1.10.10.603.2E-1873115IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEYSKTGNGA HQKRFTCNKF HWRPEEDEKL TSLVQKIGPN NWELIAKQFR GRTGKSCRLR  60
WVNQLDPDIV KAPFTVEEKR KLLELHQFYG NKWAVISKHF DRRTDNQVKN QYHVLVGSRT  120
IRASSPPSGD NLEDTPKEES MNLSLLENVS TMASGSQFSK FSYDKDSNAG FDPSSVVTPY  180
RVEIPFIHNG PYSVYGKDEM WYGASGSNPG MADPHSFENA NLGYINSDQH TFWDDAMNSD  240
ISYTELLNLP VETPPQQGYV KDHQFIDFFG IEKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-242212010108B-MYB
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV51189.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7D2U00.0A0A2Z7D2U0_9LAMI; Transcriptional activator Myb-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1678945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33450.12e-44myb domain protein 69