PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV51115.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family NAC
Protein Properties Length: 310aa    MW: 34646.8 Da    PI: 8.8689
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV51115.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM108.67.6e-34581991128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleev.ikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk......sgyWka 85 
                 lp+G++F+P+d+e++ ++L++kv ++       ++++   i+   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++      + +W++
  KZV51115.1  58 LPAGVKFDPSDQEIL-QHLEAKVISDIrkrhplIDEFIPtIQGEnGICYTHPEKLP-GVSKDGQVRHFFHRPSKAYTTGTRKRRKVHtdadggETRWHK 154
                 799***********9.899999876554555553333333666657**********.566677888******************744456555778*** PP

         NAM  86 tgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                 tgk+++v s+ g+++g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  KZV51115.1 155 TGKTRPVNSTAGNVKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 199
                 ************************66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.05E-3753218IPR003441NAC domain
PROSITE profilePS5100534.6358218IPR003441NAC domain
PfamPF023655.0E-1559199IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MTWCSNDQET ALQIISSSQD NTSVSYPNDD QFKTLICPSC GHTIKLQDQT GLQDLPGLPA  60
GVKFDPSDQE ILQHLEAKVI SDIRKRHPLI DEFIPTIQGE NGICYTHPEK LPGVSKDGQV  120
RHFFHRPSKA YTTGTRKRRK VHTDADGGET RWHKTGKTRP VNSTAGNVKG YKKILVLYTN  180
YGRQRKPEKT NWVMHQYHLG DNEEEKDGEL VVSKVFYQTQ PRQCGSSSMK EALMSPDKSR  240
ASTQSEKDGT FVKNGSFVEY YNPPPFISYG TGSPNHANRD SAPQIIIPNL VVHGDGSTLF  300
HMPSSASKGK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV51115.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011096365.11e-171NAC domain-containing protein 73
SwissprotO494591e-117NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A2Z7CXN90.0A0A2Z7CXN9_9LAMI; NAC domain-containing protein 8
STRINGXP_009797428.11e-150(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-120NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]