PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV50986.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ARR-B
Protein Properties Length: 620aa    MW: 69003.3 Da    PI: 7.2573
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV50986.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like83.71.9e-26207260155
     G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                 kpr++W+ eLH++F  av+qL G ++A+Pk+ile+m+v+gLt+e+v+SHLQkYR+
  KZV50986.1 207 KPRVVWSIELHQQFETAVNQL-GVDNAVPKKILEIMNVPGLTRENVASHLQKYRV 260
                 79*******************.********************************7 PP
2Response_reg77.74e-26261351110
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+ + + +l+++l +  y ev+ ++ +e+al+ll+ek+  +D+++ D+ mp+mdG++ll++ir e  +lp+i++++ +++e++ + ++ Ga 
    KZV50986.1  26 VLVVDDDSSSLLILERMLLDCLY-EVTKCELAEAALQLLREKKdgFDIVMSDVHMPDMDGFKLLEQIRLEM-DLPVIMMSTDDTKELVMKGVRHGAC 120
                   89*********************.***************999999**********************9976.************************* PP

                   EEEESS--HHHHHHH CS
  Response_reg  96 dflsKpfdpeelvka 110
                   d+l+Kp+ +++l ++
    KZV50986.1 121 DYLVKPVRMDALKNM 135
                   **********99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363925.7E-1476619IPR017053Response regulator B-type, plant
SuperFamilySSF521727.68E-3523144IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.4E-4023155No hitNo description
SMARTSM004482.5E-3024136IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.20525140IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.8E-2226135IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.04E-2927140No hitNo description
PROSITE profilePS5129410.252204263IPR017930Myb domain
SuperFamilySSF466893.94E-19205264IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-28206265IPR009057Homeodomain-like
TIGRFAMsTIGR015579.8E-23207260IPR006447Myb domain, plants
PfamPF002495.2E-7209259IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MSCTRSTGSW KSSDGVPHQF PAGLRVLVVD DDSSSLLILE RMLLDCLYEV TKCELAEAAL  60
QLLREKKDGF DIVMSDVHMP DMDGFKLLEQ IRLEMDLPVI MMSTDDTKEL VMKGVRHGAC  120
DYLVKPVRMD ALKNMWQHVI RRKKCGWKEK NYPQQSGSVE DGDQLRKSLE DIDYSSSPNE  180
GHLQNTKRRK DDKDDIEERN DIPALKKPRV VWSIELHQQF ETAVNQLGVD NAVPKKILEI  240
MNVPGLTREN VASHLQKYRV YLKRINSRNG QGNSFMKPPG AAFAATCSIK SLDLQALAAS  300
DQLPHHCVNS IPTPSLGTIA TTPAMSVIPT DQTKILSLKN LNMRFTEGQQ PNCNVKQVSM  360
LHGVPTNMNS KQLATLHQAA HVTYGNMNLH SHPHVNQNNL LHTQMVQQQP SAQISNGMKG  420
AHLTNLPSVS QPQTIPNAAV LGGKDFSRPA YSVSQPSTFA ALSSCQRTGL PGNSFSLVRS  480
SGVSTLTSKG LLPEVVNSEV KGHQCFLSNF DTISDQNHHH RNQDWVMHQV GSTLEARQHP  540
NFQLGMDTSP TRFFHPGFSL DPKNVQSKTG FSVADGMDNQ QNDGDLLSVK AEKFGEVDLF  600
PESIDREDFM TIYNKQASFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A4e-21204266264ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV50986.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100812.10.0two-component response regulator ARR2 isoform X1
RefseqXP_011100813.10.0two-component response regulator ARR2 isoform X2
TrEMBLA0A2Z7D1G30.0A0A2Z7D1G3_9LAMI; Two-component response regulator
STRINGEMJ263540.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31912450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.13e-99response regulator 2