PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV50878.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 205aa MW: 23663.6 Da PI: 5.4527 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65 | 1.1e-20 | 16 | 69 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k ++f++eq+++Le++Fe+++++ ++e+LAk+lgL+ rq+ +WFqN+Ra++k KZV50878.1 16 KERRFNDEQIRTLEAVFESESKLEPGKKEKLAKQLGLQPRQIAIWFQNKRARWK 69 6679*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 109.3 | 2.7e-35 | 16 | 107 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 k rr+++eq+++LE Fe+e+kLep +K++la++Lglqprq+a+WFqn+RAR+k+k +Ekd+ L + y++l+++ e+L+ke++ L +l++ KZV50878.1 16 KERRFNDEQIRTLEAVFESESKLEPGKKEKLAKQLGLQPRQIAIWFQNKRARWKSKTVEKDHGLLLADYKNLSSQFESLKKENQCLLFQLRK 107 89**********************************************************************************99988875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 17.216 | 11 | 71 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 6.42E-18 | 14 | 78 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.5E-18 | 14 | 75 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.46E-15 | 16 | 71 | No hit | No description |
Pfam | PF00046 | 5.6E-18 | 16 | 69 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.2E-20 | 18 | 76 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.6E-6 | 42 | 51 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 46 | 69 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.6E-6 | 51 | 67 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.9E-9 | 73 | 111 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MINLEPSNHK KQKSSKERRF NDEQIRTLEA VFESESKLEP GKKEKLAKQL GLQPRQIAIW 60 FQNKRARWKS KTVEKDHGLL LADYKNLSSQ FESLKKENQC LLFQLRKLKN ETAPMNTRNV 120 DSLVKDIPSK YMEGIVSNDE HSSSVEKVVP LGFEEEESYQ FLNSATAEVL DVSSTSSPLE 180 DFGSLESDDM INQVTASTDQ WWFWS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269|PubMed:15604708, ECO:0000269|PubMed:8771791}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV50878.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682, ECO:0000269|PubMed:8771791}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011093009.1 | 4e-51 | homeobox-leucine zipper protein ATHB-12 | ||||
Swissprot | P46897 | 1e-37 | ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7 | ||||
TrEMBL | A0A2Z7CVX3 | 1e-148 | A0A2Z7CVX3_9LAMI; Homeobox-leucine zipper protein ATHB-12 | ||||
STRING | Solyc01g096320.2.1 | 4e-47 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2041 | 23 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46680.1 | 4e-40 | homeobox 7 |
Publications ? help Back to Top | |||
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