PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV50707.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | GATA | ||||||||
Protein Properties | Length: 529aa MW: 58878.1 Da PI: 7.6 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 34.2 | 3.4e-11 | 1 | 27 | 9 | 35 |
GATA 9 TplWRrgpdgnktLCnaCGlyyrkkgl 35 TplWR+gp ++ LCnaCG ++r kg+ KZV50707.1 1 TPLWRNGPPEKPILCNACGSRWRTKGT 27 9*******66666***********997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00202 | 6.83E-11 | 1 | 39 | No hit | No description |
Pfam | PF00320 | 6.2E-9 | 1 | 27 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 1.9E-7 | 1 | 27 | IPR013088 | Zinc finger, NHR/GATA-type |
SMART | SM00401 | 0.0078 | 1 | 39 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.98E-6 | 1 | 31 | No hit | No description |
Pfam | PF13919 | 1.7E-9 | 268 | 364 | IPR028020 | ASX homology domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 529 aa Download sequence Send to blast |
TPLWRNGPPE KPILCNACGS RWRTKGTLAN YTPLHARTEH EELEDYRVSK VKTISIKNKE 60 PKVIKRKYGH NNDDIAEFRG VPPDYGLGFH KGFDKDTSNG SSSGSAISNS ESCVQYGSAD 120 ASDLTGPSQP AVWDTMVPSK KRTCVTRSKP SPVEKLTKDL YTIWHEQWPS LSGSSEEELL 180 LESGKPMVSV EIGHGSVLIR HPNSIAREEE SEASSLSFDN KKHAVNSRHT TFPGLMKDKG 240 IDSSSRAIEK IKRPANPGIE QDRIKRGKDQ LETVQILAHH NSPLCYIDLQ DVLNMDKFLS 300 HLTTEEQKQL LNFLSPVDTL RSQDSLKSMF DSPQFKENLL SFQRLLSEGV FDNSLSGLKI 360 EDYRTLKKLI LFNSTKSKWV EHYQIFKELK GKNCEKGSEV AGTSNTLPAD YSSCVKPTQD 420 GQHQKLPGAN AVMKSPRRIT TKPSYDQKEL TDNDGSFFSP KRLFSSPIDN VSLVLDSSCF 480 ADESSEQELL LDIPSSGSFP QAELLIPTSS FGAQASTSSS SVFSNLNRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV50707.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011070264.1 | 0.0 | GATA transcription factor 26 | ||||
TrEMBL | A0A2Z7CXJ9 | 0.0 | A0A2Z7CXJ9_9LAMI; GATA transcription factor 26-like (Fragment) | ||||
STRING | XP_009772103.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2089 | 24 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17570.3 | 1e-110 | GATA transcription factor 26 |