PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV50078.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | GRAS | ||||||||
Protein Properties | Length: 533aa MW: 59061.6 Da PI: 6.5844 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 246.1 | 1.4e-75 | 148 | 528 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsPilkfshltaN 99 ++lL cA av++++ +++ ++L l++las +gd+++Rl +y + AL++++++ +s+ +++ ++ +++n + + +l f+++sP++++ + ++N KZV50078.1 148 EQLLNPCAAAVTARNPSRVLHFLYVLHDLASLSGDANHRLSFYGLCALKHHVSSaPGSSFSASTDGKTFASSNPKFFTDSLIKFNDISPWFRIPNNVTN 246 689***************************************************88888898899999999888888888888**************** PP GRAS 100 qaIleavege...ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg..........skeeleetgerLakfAeelgvpfefnvlvak 184 aIl+ ++++ + +Hi+D+++s+G+QWp+Ll++L+ R+ ++pp +R+T+v++++ + + ++L +fA+ l+v++++n l KZV50078.1 247 TAILQLLAEQaqpSNLHILDIGVSHGVQWPTLLEELTRRAgGPPPLVRLTVVAPAAMNdlsrntapfaNGPPDYDFSSKLLSFAKDLNVNLQINRLENL 345 *******999888999************************55666********98877899988888877788899*******************9888 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklprese 280 +l++l+ + ++ + +E l+V+ +++lh+l + +++ r+++Lk+++slsPk v+++e++ +++ n ++F+++f++ +ey + ++ds++ + + KZV50078.1 346 QLQNLNSQLIKSSAEEILVVCAQFRLHNLT---HGITDDRTKFLKVLRSLSPKGVILCENNtdCSCiNCGDFATGFSRRVEYLWRFLDSTSIAY----K 437 *****************************8...77777799******************9944555899*********************7774....6 PP GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 r + Er++++ e+ +v+ ++g++ +e++ekW +r+++aGF+ ++e++ + ak+llrk++ +++ rve+++g++ l W+++p+ ++S W+ KZV50078.1 438 GRESEERRMMEAEAAKVLINSGEM----NERKEKWCDRMRHAGFTGDVFGEETIDGAKALLRKYDsNWEIRVEDRDGCVGLLWRGQPVSFCSLWK 528 6666666667777999******99....88888********************************9999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 38.03 | 121 | 507 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.0E-73 | 148 | 528 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042446 | Biological Process | hormone biosynthetic process | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation |
Sequence ? help Back to Top |
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Protein Sequence Length: 533 aa Download sequence Send to blast |
MPNHISEWIE DSISYFPMFF DDPYDTGDLI GDSWWVEGQN LEQDLIDDSF ITNSSMTSAT 60 LPPAPAPAPA PTDSTISLDS MKKRKLADDL NSMKPRKTTN KRANAQDLGR ESPEQGLVVA 120 RKQGGNKKGS KAAGNGSNGN NKEGRWAEQL LNPCAAAVTA RNPSRVLHFL YVLHDLASLS 180 GDANHRLSFY GLCALKHHVS SAPGSSFSAS TDGKTFASSN PKFFTDSLIK FNDISPWFRI 240 PNNVTNTAIL QLLAEQAQPS NLHILDIGVS HGVQWPTLLE ELTRRAGGPP PLVRLTVVAP 300 AAMNDLSRNT APFANGPPDY DFSSKLLSFA KDLNVNLQIN RLENLQLQNL NSQLIKSSAE 360 EILVVCAQFR LHNLTHGITD DRTKFLKVLR SLSPKGVILC ENNTDCSCIN CGDFATGFSR 420 RVEYLWRFLD STSIAYKGRE SEERRMMEAE AAKVLINSGE MNERKEKWCD RMRHAGFTGD 480 VFGEETIDGA KALLRKYDSN WEIRVEDRDG CVGLLWRGQP VSFCSLWKMD SAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 1e-30 | 144 | 528 | 84 | 473 | Protein SHORT-ROOT |
5b3h_B | 7e-31 | 144 | 528 | 30 | 419 | Protein SHORT-ROOT |
5b3h_E | 7e-31 | 144 | 528 | 30 | 419 | Protein SHORT-ROOT |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator essential for Nod-factor-induced gene expression. Acts downstream of calcium spiking. May be a target of DMI3, a calcium/calmodulin-dependent protein kinase (CCaMK) (PubMed:15961669). Is essential for Nod factor-elicited expression of ERN1 (PubMed:23077241). {ECO:0000269|PubMed:15961669, ECO:0000269|PubMed:23077241}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV50078.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced after treatment with Sinorhizobium meliloti. {ECO:0000269|PubMed:15961669}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011072582.1 | 0.0 | nodulation-signaling pathway 1 protein | ||||
Swissprot | Q4VYC8 | 0.0 | NSP1_MEDTR; Nodulation-signaling pathway 1 protein | ||||
TrEMBL | A0A2Z7CTM3 | 0.0 | A0A2Z7CTM3_9LAMI; Nodulation-signaling pathway 1 protein-like | ||||
STRING | Migut.I01075.1.p | 0.0 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4949 | 21 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13840.1 | 1e-139 | GRAS family protein |
Publications ? help Back to Top | |||
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