PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV49751.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family B3
Protein Properties Length: 295aa    MW: 32636.4 Da    PI: 8.2017
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV49751.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.62e-171196190
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
          B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90
                ffkvl++ d ++  +l+lp  f+++ g++ ++ +  +l+ +sg+ W+vkl  +k+ ++ y++++GW +F+++ gL  g+f+vF ++gr  f
  KZV49751.1 11 FFKVLINDDFNR--QLRLPPAFVKKWGEILPQ-FHAQLRASSGKMWDVKL--EKHEDQsYYFAGGWVKFCEDLGLSIGEFLVFWYSGRAIF 96
                899996655544..59*******999777555.79***************..7766666*************************9997666 PP
2B343.84.7e-14161244186
                 EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                 f+k+l   d+  s rl +pk+f+ + g+   +++++ l+d+++r W v++     +k+++++vlt+GW+eF   n++  g +vv+k + 
  KZV49751.1 161 FCKKL---DHRYSTRLEIPKTFVLSAGIG--CHRMVHLQDSKSRLWPVQMVSvsrQKGGNGFVLTAGWNEFLVGNKVAIGSTVVLKCEA 244
                 56666...66777789*******999876..889****************66665666666************************9543 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-207106IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.71E-227106IPR015300DNA-binding pseudobarrel domain
CDDcd100172.34E-199101No hitNo description
PROSITE profilePS5086312.1829104IPR003340B3 DNA binding domain
SMARTSM010196.7E-1411104IPR003340B3 DNA binding domain
PfamPF023622.5E-141195IPR003340B3 DNA binding domain
PROSITE profilePS508639.587158258IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.3E-12160246IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.96E-12161251IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0012161256IPR003340B3 DNA binding domain
CDDcd100171.87E-8161250No hitNo description
PfamPF023629.2E-11162244IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGTNPKSRPS FFKVLINDDF NRQLRLPPAF VKKWGEILPQ FHAQLRASSG KMWDVKLEKH  60
EDQSYYFAGG WVKFCEDLGL SIGEFLVFWY SGRAIFDVSV YGISGCGRET TAINDPVKDS  120
DPDEAVNRAP VVTDLDVKAK IEDEDGIDPP DEFGVGEIGV FCKKLDHRYS TRLEIPKTFV  180
LSAGIGCHRM VHLQDSKSRL WPVQMVSVSR QKGGNGFVLT AGWNEFLVGN KVAIGSTVVL  240
KCEAPGGSLV KAKVLDNGTK GGQLIQPPRG KGRPSKTCIS YQLNVSPCKE ECVFF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV49751.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7CRN10.0A0A2Z7CRN1_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6635931
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.15e-14B3 family protein