PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV49476.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | FAR1 | ||||||||
Protein Properties | Length: 192aa MW: 22056.1 Da PI: 5.6842 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 29 | 3.5e-09 | 141 | 186 | 2 | 47 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 Y++YA+ GFsvrk +++ ++++ei +++f Cs +g ++e++++ KZV49476.1 141 LYCQYAHAKGFSVRKGEQRCFSHSKEIQSKEFSCSYKGLKDEKRSS 186 59*************************************9998766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.8E-7 | 141 | 186 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MSFIAVNLPD FIDRLLIKSQ YIAIAVKGSK VSDLRIYGIE DPVTPFYLWY RGPGHSGRDT 60 ITVGPWLYSK MEVEDLLSLE ELEENHIEEV VCREFSTTRF GLPNFSRSEI EVPTENSIVD 120 VLKSKLEVGS IVNNLEEAYL LYCQYAHAKG FSVRKGEQRC FSHSKEIQSK EFSCSYKGLK 180 DEKRSSKHIF NE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV49476.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2Z7CXB3 | 1e-139 | A0A2Z7CXB3_9LAMI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA16786 | 2 | 3 |