PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV49469.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 235aa MW: 27255.3 Da PI: 7.0781 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 60.3 | 3e-19 | 30 | 83 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ eq+++Le+ Fe+ +++ e++ +LA+ lgL+ rqV +WFqNrRa++k KZV49469.1 30 KKRRLNMEQVKALEKSFEMGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWK 83 456899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 132 | 2.3e-42 | 29 | 120 | 1 | 92 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ eqvk+LE+sFe+ +kLeperK++lar+Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr+++alk +n++L++++++L+++l KZV49469.1 29 EKKRRLNMEQVKALEKSFEMGNKLEPERKMQLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDVLKRQFEALKLDNDALKSQNTKLQSQLL 120 69**************************************************************************************9985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 5.13E-20 | 24 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.038 | 25 | 85 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.8E-19 | 28 | 89 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 1.7E-16 | 30 | 83 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.35E-16 | 30 | 86 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.6E-20 | 32 | 92 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.5E-6 | 56 | 65 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 60 | 83 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.5E-6 | 65 | 81 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 1.0E-15 | 85 | 125 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MRRSMSFSGL DGDEREDEMS DDGSQMLGEK KRRLNMEQVK ALEKSFEMGN KLEPERKMQL 60 ARALGLQPRQ VAIWFQNRRA RWKTKQLEKD YDVLKRQFEA LKLDNDALKS QNTKLQSQLL 120 ALKGREPRVV STAINLNKEN EACWSNGSDD TYQVVNLNAV STLDDTQNND DNNKNVVVFP 180 SSPDISAPNQ ADRFQNHKIN NYHHPPSSNH QIFNMFGNID GGQNFWPWHE QQNYQ |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 77 | 85 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may act in the sucrose-signaling pathway. {ECO:0000269|PubMed:11292072}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV49469.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011098601.1 | 8e-94 | homeobox-leucine zipper protein HOX21 | ||||
Swissprot | Q8LC03 | 1e-65 | ATB13_ARATH; Homeobox-leucine zipper protein ATHB-13 | ||||
TrEMBL | A0A2Z7CXT2 | 1e-174 | A0A2Z7CXT2_9LAMI; Homeobox-leucine zipper protein ATHB-13 | ||||
STRING | XP_004135187.1 | 8e-81 | (Cucumis sativus) | ||||
STRING | XP_004155316.1 | 8e-81 | (Cucumis sativus) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA848 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69780.1 | 2e-68 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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