PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV49381.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 525aa    MW: 56949 Da    PI: 9.1291
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV49381.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.7e-055779123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                + C+ C+k F r  nL+ H r H
  KZV49381.1 57 FICEVCNKGFQREQNLQLHRRGH 79
                89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF121711.9E-55679IPR022755Zinc finger, double-stranded RNA binding
Gene3DG3DSA:3.30.160.601.4E-55779IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00525779IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.0E-75779No hitNo description
PROSITE profilePS5015710.995779IPR007087Zinc finger, C2H2
PROSITE patternPS0002805979IPR007087Zinc finger, C2H2
SMARTSM0035515099129IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.9E-5122155IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.0E-7129154No hitNo description
SMARTSM0035588134154IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MAASSNFSSA FLGVGDENEI QIKENQHQQI LSTVQSQPSA SNLLKKRRNQ PGNPCKFICE  60
VCNKGFQREQ NLQLHRRGHN LPWKLKQKGP KDQIRRKVYL CPEPTCVHHD SARALGDLTG  120
IKKHYSRKHG EKKYKCDKCS KKYAVHSDWK AHSKTCGTRE YKCDCGTLFS RRDSFITHRA  180
FCDALAQESA RNLNPTSLTT GEFDPPLATQ DVLRLGNGGT ARPGPQFDTL VCPGFRFQPP  240
STVAAFFGLQ PHNDNQEDKN NQLGSTLPNK APSSFQGLMQ LPPQLQITAN NGSNSSSMAG  300
VFNLGFFPNG CNAVANGGAR HGSGGGQEEY ATLFSNGNIM SAALPSLYST SHAIQNPSSA  360
HMSATALLQK AAQLGSTTSN NAASSLLKTF GKSNQSTLDQ ENYVGSTSVF GDSTYNGISH  420
LQDLVHHMNS SVGGGAYNHE EIHHEDEYRG FRAYNSNNNN TTNEIDTGFS SSSNSVDRAG  480
AGRLTRDFLG VGRGQPQHGM GFGSLMESSG KHGASPRAFG RGSFH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33130191364Zinc finger protein JACKDAW
5b3h_F2e-33130191364Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV49381.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020547771.11e-174protein indeterminate-domain 5, chloroplastic-like
TrEMBLA0A2Z7CQM00.0A0A2Z7CQM0_9LAMI; Zinc finger protein MAGPIE
STRINGMigut.E00578.1.p1e-150(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.18e-88indeterminate(ID)-domain 4