PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV49032.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

GRAS

Protein Properties

Length: 617aa MW: 67554.1 Da PI: 5.6974

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV49032.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	305.5	1.3e-93	256	614	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +++L+++Ae v++g+ l+q +Larl+++ sp ++p++R+a+y eAL+ l+++ + ++++++s+ s + ++ a+k fse+sP+++f+++t+Nq KZV49032.1 256 IDQLYKVAELVQTGNPILTQGILARLNHQFSPIDKPFRRAAFYCEEALQMLLHSNNTPNMSSFNSSPCS---LVFKIGAYKSFSEISPLVQFTNFTCNQ 351 689*************************************************777777778888877...9********************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle.leeLrvkp 198 aIlea++g +r+Hi+Dfdi++G+QW++L+++LasR +g l+iT+v+ p+++++ el t+e+L +fA e++++fef+++ +++++ + +L + KZV49032.1 352 AILEALDGFDRIHIVDFDIGYGGQWASLIHELASRGRGVTLLKITAVVFPSTHDQIELGLTRENLVQFAGEINLDFEFEAMSIDSFNSSSwCPSLVASG 450 ****************************************************************************9888777765256788888 PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297 +Ea+aVnl + +++d++++++ vL+ vk+lsP++vv v++ +d+ + sF r+++ +++ys+l++slea + ++ + +k+Er+l+++ i++ KZV49032.1 451 NEAVAVNLPF--GSFMDHQLPVSL----VLHRVKQLSPRIVVSVNKGCDRADLSFPGRVINIVQTYSSLLESLEAA-SMNTGTLQKIERFLIQPGIQKS 542 ******..667766777777....*****************************************888.6899************** PP GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ + e+ ++ +++ ++GF+p+++s+ a++qa++++++++++g+++e+++ sl+l+Wk+ +L+s+SaWr KZV49032.1 543 ITGHFR-----IEKPQNYMSAFLSSGFTPATFSSIAESQAECVVKRTPVRGFHLENDQSSLLLCWKKMELISASAWR 614 986554.....58888999*******************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	40.743	229	594	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.4E-91	256	614	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 617 aa Download sequence Send to blast
MPLPFDFEGT GVLDLELILR NRGFFSDYCN KSYFLNGNCG EPTSVLDSAR VPSRPSSSST 60 LSSSFGGGGG GGADTELLPV PPSLEIETAC GGGNAEKCGV GDWESVFSGS VAPSPVQEQS 120 IFRWILSSNL HSNPVYSSIS NNLGSFALHQ QPAYDSPPEM KSPICNPQLH LNQNQTQYSH 180 NSLFFSPLTY SQHQESDLFA SPQAKRLNSG SIGGFLEPSG GHISKGSYFL TSQNLHQKPI 240 ESVPNSIVGS EEQQAIDQLY KVAELVQTGN PILTQGILAR LNHQFSPIDK PFRRAAFYCE 300 EALQMLLHSN NTPNMSSFNS SPCSLVFKIG AYKSFSEISP LVQFTNFTCN QAILEALDGF 360 DRIHIVDFDI GYGGQWASLI HELASRGRGV TLLKITAVVF PSTHDQIELG LTRENLVQFA 420 GEINLDFEFE AMSIDSFNSS SWCPSLVASG NEAVAVNLPF GSFMDHQLPV SLVLHRVKQL 480 SPRIVVSVNK GCDRADLSFP GRVINIVQTY SSLLESLEAA SMNTGTLQKI ERFLIQPGIQ 540 KSITGHFRIE KPQNYMSAFL SSGFTPATFS SIAESQAECV VKRTPVRGFH LENDQSSLLL 600 CWKKMELISA SAWRCYY

Sequence ? help Back to Top

Protein Sequence Length: 617 aa Download sequence Send to blast

MPLPFDFEGT GVLDLELILR NRGFFSDYCN KSYFLNGNCG EPTSVLDSAR VPSRPSSSST  60
LSSSFGGGGG GGADTELLPV PPSLEIETAC GGGNAEKCGV GDWESVFSGS VAPSPVQEQS  120
IFRWILSSNL HSNPVYSSIS NNLGSFALHQ QPAYDSPPEM KSPICNPQLH LNQNQTQYSH  180
NSLFFSPLTY SQHQESDLFA SPQAKRLNSG SIGGFLEPSG GHISKGSYFL TSQNLHQKPI  240
ESVPNSIVGS EEQQAIDQLY KVAELVQTGN PILTQGILAR LNHQFSPIDK PFRRAAFYCE  300
EALQMLLHSN NTPNMSSFNS SPCSLVFKIG AYKSFSEISP LVQFTNFTCN QAILEALDGF  360
DRIHIVDFDI GYGGQWASLI HELASRGRGV TLLKITAVVF PSTHDQIELG LTRENLVQFA  420
GEINLDFEFE AMSIDSFNSS SWCPSLVASG NEAVAVNLPF GSFMDHQLPV SLVLHRVKQL  480
SPRIVVSVNK GCDRADLSFP GRVINIVQTY SSLLESLEAA SMNTGTLQKI ERFLIQPGIQ  540
KSITGHFRIE KPQNYMSAFL SSGFTPATFS SIAESQAECV VKRTPVRGFH LENDQSSLLL  600
CWKKMELISA SAWRCYY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-29	261	613	25	378	Protein SCARECROW
5b3h_A	2e-29	239	613	2	377	Protein SCARECROW
5b3h_D	2e-29	239	613	2	377	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV49032.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022852131.1	0.0	scarecrow-like protein 22 isoform X2
TrEMBL	A0A2Z7CPL6	0.0	A0A2Z7CPL6_9LAMI; Scarecrow-like protein 22-like
STRING	PGSC0003DMT400066799	0.0	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6253	22	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00150.1	1e-112	GRAS family protein