PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV48929.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family Trihelix
Protein Properties Length: 540aa    MW: 61435.1 Da    PI: 6.971
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV48929.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.21.3e-29100185187
    trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                 rW++qe+l+L+e+r++++ +++++++k+plW+evs+ m  e+g++rs k+C+ek+enl k+ykk+++g+ +r  ++ +++++f+qlea
  KZV48929.1 100 RWPRQETLTLLEIRSRLDPKFKEANQKGPLWDEVSRIMsDEHGYQRSGKKCREKFENLYKYYKKTRDGKAGR--QDGKHYRFFRQLEA 185
                 8*************************************99******************************98..55667*******85 PP
2trihelix41.82.9e-13400470271
    trihelix   2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                 W+++e+  Li +r+ me ++r+ g +++ lW+e+s km+  g  r+  +C++kw+++n+   + k+ e++r
  KZV48929.1 400 WPESEITRLIHLRSGMEVKFRQsGIRDEVLWDEISHKMACFGHDRTGLMCRNKWDSVNNHVMNKKRKENSR 470
                 *********************835688*******************************9877777776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.6697160IPR001005SANT/Myb domain
PROSITE profilePS500906.737100158IPR017877Myb-like domain
CDDcd122031.58E-19100165No hitNo description
PfamPF138376.0E-20100186No hitNo description
PROSITE profilePS500906.667392457IPR017877Myb-like domain
SMARTSM007170.064396459IPR001005SANT/Myb domain
PfamPF138376.4E-10398468No hitNo description
CDDcd122036.22E-16400458No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009909Biological Processregulation of flower development
GO:0010200Biological Processresponse to chitin
GO:0046621Biological Processnegative regulation of organ growth
GO:0048442Biological Processsepal development
GO:0048498Biological Processestablishment of petal orientation
GO:0090428Biological Processperianth development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MEDQYGGMAD LRQFISDRPF FPPPPPELLP AHRSLSPSQH YEMLMLQREM QHHEFPSDST  60
NSACVTAAGL SGLETEATGV QIGGGEAAGG GGGGDSCTAR WPRQETLTLL EIRSRLDPKF  120
KEANQKGPLW DEVSRIMSDE HGYQRSGKKC REKFENLYKY YKKTRDGKAG RQDGKHYRFF  180
RQLEALYGEN SYSASVSETH FNGGSLQYNV PNKNTLSAYN QESYPGALKL SETTSLSLSN  240
SSDSDTDLSD DTGTNVGINR EKGHDCDDDT PKKKMRKGKS SWKAKIKDFI DSKMKKLMDK  300
QEAWMEKMLR AIEHKEQERM TREEEWRKQD AARIEREHKF WASERAWMEA RDATLMNALQ  360
KLAGKECRAS PHEDFTGRCE NQNDHSSETR SNSAKRGDVW PESEITRLIH LRSGMEVKFR  420
QSGIRDEVLW DEISHKMACF GHDRTGLMCR NKWDSVNNHV MNKKRKENSR ICCYNYQNNE  480
SICNQTGGAY SDTSEQGIDN PVSLNGHGNS PYNNSDAGNI ATSDTCFRYF MGDGYGRILD
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269|PubMed:10572040, ECO:0000269|PubMed:15269176, ECO:0000269|PubMed:18080804}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV48929.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269|PubMed:15269176}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011094408.10.0trihelix transcription factor PTL
SwissprotQ9LZS01e-118PTL_ARATH; Trihelix transcription factor PTL
TrEMBLA0A2Z7CWA40.0A0A2Z7CWA4_9LAMI; Trihelix transcription factor PTL
STRINGVIT_08s0007g03820.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30632451
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.12e-52Trihelix family protein
Publications ? help Back to Top
  1. Quon T,Lampugnani ER,Smyth DR
    PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana.
    Front Plant Sci, 2017. 8: p. 152
    [PMID:28228771]