PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV48914.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 348aa    MW: 38927.6 Da    PI: 5.837
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV48914.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.7e-151158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W +eEd ll+++v+q+G g W++++ + g+ R++k+c++rw++yl
       KZV48914.1 11 KGAWCKEEDALLKNCVEQYGEGKWNLVPLRTGLSRCRKSCRLRWLNYL 58
                     799*******************************************97 PP
2Myb_DNA-binding43.95.6e-1464119146
                      TSSS-HHHHHHHHHHHHHTTTT...........-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...........tWktIartmgkgRtlkqcksrwqk 46 
                      rg++T +E +ll +++k+lG++           +W++Ia +++ gRt++++k++w++
       KZV48914.1  64 RGKFTRDEVDLLMRLHKLLGNRqvsltvlpsfvSWSLIAGRLP-GRTANDVKNFWNT 119
                      89*****************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.439662IPR017930Myb domain
SuperFamilySSF466896.13E-238117IPR009057Homeodomain-like
SMARTSM007173.4E-121060IPR001005SANT/Myb domain
PfamPF002491.2E-131158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.0E-201265IPR009057Homeodomain-like
CDDcd001672.81E-91358No hitNo description
SMARTSM007176.5E-963123IPR001005SANT/Myb domain
PROSITE profilePS5129412.20163125IPR017930Myb domain
PfamPF002492.0E-1264119IPR001005SANT/Myb domain
CDDcd001678.07E-866119No hitNo description
Gene3DG3DSA:1.10.10.601.5E-1966124IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MESANSLGVR KGAWCKEEDA LLKNCVEQYG EGKWNLVPLR TGLSRCRKSC RLRWLNYLRP  60
NITRGKFTRD EVDLLMRLHK LLGNRQVSLT VLPSFVSWSL IAGRLPGRTA NDVKNFWNTR  120
MERKSGGGKG QAIQKTITKA NIIRPRPRTF SNLTIQDGSG AASVADNLHK PNDPDKNNNN  180
NNNNIMSESL SSQEAEESIR WWSNLLDEAA EDKFENDIPL VDEKGKQAGL WTGHINPEGL  240
VDEEEDYLLA SDDLELDAEV WELLGFGAWA KAQASPRDVS PLSSTLQARP ATSSGTPPED  300
HVPTTEEESA LDTPFLIQTN PAGYVFPYLK DPWAIRLSLF GRRDPRGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-18111247107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV48914.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099468.16e-71transcription factor MYB1
SwissprotQ9FNV91e-55MY113_ARATH; Transcription factor MYB113
TrEMBLA0A2Z7CW400.0A0A2Z7CW40_9LAMI; R2r3-myb transcription factor
STRINGXP_002534011.13e-65(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.11e-57myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]