PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV48910.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 263aa    MW: 30399.1 Da    PI: 8.1065
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV48910.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.26.9e-171158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd ll ++v+q+G g+W++++ + g++R++k+c++rw++yl
       KZV48910.1 11 KGAWSKEEDALLRKCVQQFGVGRWHLVPLRSGLNRCRKSCRLRWLNYL 58
                     79********************************************97 PP
2Myb_DNA-binding46.39.6e-1564107146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T +E +ll++++k+lG++ W++Ia +++ gRt++++k++w++
       KZV48910.1  64 RGNLTRDEIDLLIRLHKLLGNR-WSLIAGRIP-GRTANDLKNFWNT 107
                      7899******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.901662IPR017930Myb domain
SuperFamilySSF466893.74E-278105IPR009057Homeodomain-like
SMARTSM007174.3E-151060IPR001005SANT/Myb domain
PfamPF002492.3E-151158IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-201265IPR009057Homeodomain-like
CDDcd001672.76E-101358No hitNo description
SMARTSM007173.8E-1363111IPR001005SANT/Myb domain
PROSITE profilePS5129417.32563113IPR017930Myb domain
PfamPF002491.2E-1264107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2066112IPR009057Homeodomain-like
CDDcd001671.72E-968107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MERAKSLGVR KGAWSKEEDA LLRKCVQQFG VGRWHLVPLR SGLNRCRKSC RLRWLNYLRP  60
DIRRGNLTRD EIDLLIRLHK LLGNRWSLIA GRIPGRTAND LKNFWNTRME KKSREKVQPI  120
QKAITKTSIL RPRPRNFSKL MVHDHHGTRL ATDDFHQSTS DNSTNDNDNK LLPSSSQGSD  180
EDIGWWSNLL DASEDQLEKD ITFADGKGEE EGLWMGQKNP AGLLNDWADH AIPANEFADD  240
DFNFEDDVWE RLGFGNYDAI LQY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-22111124104MYB PROTO-ONCOGENE PROTEIN
1h88_C2e-211111258158MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-211111258158MYB PROTO-ONCOGENE PROTEIN
1mse_C7e-22111124104C-Myb DNA-Binding Domain
1msf_C7e-22111124104C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00213DAPTransfer from AT1G66370Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV48910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073629.15e-72transcription factor MYB114
SwissprotQ9FNV95e-60MY113_ARATH; Transcription factor MYB113
TrEMBLA0A2Z7CPC70.0A0A2Z7CPC7_9LAMI; Uncharacterized protein
STRINGXP_009627993.13e-66(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.14e-61myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]