PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV48417.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 317aa    MW: 35665.7 Da    PI: 6.7378
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV48417.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.41.4e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+lv  ++++G  +W++I++  g+ R++k+c++rw +yl
       KZV48417.1 14 RGLWSPEEDEKLVTHITKHGHACWSSIPKLAGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding52.41.2e-1667110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T++E+  ++d+++ lG++ W+ Ia++++ gRt++++k++w++
       KZV48417.1  67 RGSFTEQEETTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWNS 110
                      89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.3E-27564IPR009057Homeodomain-like
PROSITE profilePS5129417.923961IPR017930Myb domain
SuperFamilySSF466895.14E-2911108IPR009057Homeodomain-like
SMARTSM007171.1E-121363IPR001005SANT/Myb domain
PfamPF002496.4E-151461IPR001005SANT/Myb domain
CDDcd001671.02E-111761No hitNo description
PROSITE profilePS5129425.50162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.0E-2565117IPR009057Homeodomain-like
SMARTSM007172.0E-1566114IPR001005SANT/Myb domain
PfamPF002492.9E-1567110IPR001005SANT/Myb domain
CDDcd001671.29E-1169109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MGGHQCCNKQ RVKRGLWSPE EDEKLVTHIT KHGHACWSSI PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGSF TEQEETTIID VHRILGNRWA QIAKHLPGRT DNEVKNFWNS CIKKKLIARG  120
LDPNTHNLLS SSSSSSSNNP SATNIQHPQQ FYNHYSEPNS CSNFTNNTAS IPTFKIPFST  180
DIATVAAAAT NYQLSSSSDA ALDNICSSML HYSSSTPAFA FVDIDHSVST NRWYHHPNVT  240
DVESPFHDQA ADQDCDRIML QVQQQNEMLS GNLEDNSCRS ISTLFDIEFI DSLPLPPPLV  300
YNGNSMDDRV AWDYMSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-31141167108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV48417.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022859930.15e-95transcription factor MYB86-like
TrEMBLA0A2Z7CR370.0A0A2Z7CR37_9LAMI; Uncharacterized protein
STRINGXP_009781591.12e-85(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.13e-80myb domain protein 67