PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV48212.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 324aa    MW: 37022.7 Da    PI: 6.1681
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV48212.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.77.2e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEde+l   ++++G g+W+++++  g+ R++k+c++rw +yl
       KZV48212.1 14 KGLWSPEEDEKLHTFITRFGVGCWSSVPKLAGLQRCGKSCRLRWINYL 61
                     678*******************************************97 PP
2Myb_DNA-binding48.61.9e-1567110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +++eE++l++ ++k lG++ W+ Ia  ++ gRt++++k++w++
       KZV48212.1  67 RGMFSQEEEDLIITLHKALGNR-WAQIATQLP-GRTDNEIKNFWNS 110
                      788*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-23664IPR009057Homeodomain-like
PROSITE profilePS5129416.597961IPR017930Myb domain
SuperFamilySSF466891.12E-2812108IPR009057Homeodomain-like
SMARTSM007173.2E-111363IPR001005SANT/Myb domain
PfamPF002496.1E-131461IPR001005SANT/Myb domain
CDDcd001673.17E-101761No hitNo description
PROSITE profilePS5129425.08262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.609.6E-2665116IPR009057Homeodomain-like
SMARTSM007173.6E-1466114IPR001005SANT/Myb domain
PfamPF002493.9E-1467111IPR001005SANT/Myb domain
CDDcd001671.03E-1070109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MGRHSCSVKQ KLRKGLWSPE EDEKLHTFIT RFGVGCWSSV PKLAGLQRCG KSCRLRWINY  60
LRPDLKRGMF SQEEEDLIIT LHKALGNRWA QIATQLPGRT DNEIKNFWNS CLKKKLTKQG  120
IDPNTHMPVP EIEVKKEKEY ADSVSPQILQ TKGLPNLWNS TDIDHQDYHL MQIPIQSLNG  180
NLFAKQVYDP LFLSEFQTSI DSNGYSPNFL SQDLIQGSPI VNPNSYGFNS MPNLTTFDRQ  240
NNTDYSECSS SRNNNNMVEN GSTFCWEAEN KLESMFQFQF SGIQIEETKP GLMQNQNSGD  300
FCGYQMGSLP QELIGGNLDV FHEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28121165108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV48212.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071911.11e-150transcription factor MYB86
TrEMBLA0A2Z7CMA50.0A0A2Z7CMA5_9LAMI; Myb domain protein 86
STRINGEOY208351e-123(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.17e-78myb domain protein 86