PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV48161.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 785aa    MW: 88216 Da    PI: 8.8775
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV48161.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.71.2e-17401448148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g W++eEde+lv+ ++++G g+W+++++  g+ R++k+c++rw +yl
       KZV48161.1 401 KGLWSPEEDEKLVKHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 448
                      678*******************************************97 PP

2Myb_DNA-binding422.2e-13454496145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg +++eE+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w+
       KZV48161.1 454 RGTFSQEEEGLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWN 496
                      899*******************.*********.*********998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.0E-27393451IPR009057Homeodomain-like
PROSITE profilePS5129425.393396452IPR017930Myb domain
SuperFamilySSF466898.61E-29399495IPR009057Homeodomain-like
SMARTSM007172.4E-13400450IPR001005SANT/Myb domain
PfamPF002494.3E-15401448IPR001005SANT/Myb domain
CDDcd001672.64E-11404448No hitNo description
Gene3DG3DSA:1.10.10.603.5E-24452503IPR009057Homeodomain-like
PROSITE profilePS5129419.014453503IPR017930Myb domain
SMARTSM007171.8E-11453501IPR001005SANT/Myb domain
PfamPF002495.1E-12454496IPR001005SANT/Myb domain
CDDcd001677.72E-8456496No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0009733Biological Processresponse to auxin
GO:0010089Biological Processxylem development
GO:0010119Biological Processregulation of stomatal movement
GO:0010214Biological Processseed coat development
GO:0048364Biological Processroot development
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 785 aa     Download sequence    Send to blast
MVTRWRFEGS ARIFEGMREH SNVLDSVSLY QMEVLLLWNV SLVSYRLVDR RNRLNWRLLD  60
ALAGHTIKGQ EADEESNEIQ NTIHPILNQE ISQKNNRSLQ NSREFLMNVA YSIGTRVNES  120
ADNNKRVSIP RTANQSGKSS VRDIQVWPLK LTITARWYSD TTNQSVTTPM IALCLSGATP  180
LSAGHNCGSQ SNSASTLTRS HQGTATSACS NLLSRWSRQH SKSCLGAQIQ KLKRTEELSS  240
QLRENLRTTQ LLRAPPKHRS TTSDWYQSKS IGKTNPAPPV LLQTTAEIDD NLMERGSVNN  300
NHRGESQVNH RHTQIPAYSK AKVLESESSA NSNLVSALTL NASVTNQNND VPRFPLTQAK  360
RRHTASHLKQ IPALPSAHVH SGLSNTEPHR HSCCYKQKLR KGLWSPEEDE KLVKHITKYG  420
HGCWSSVPKL AGLQRCGKSC RLRWINYLRP DLKRGTFSQE EEGLIIELHA VLGNRWSQIA  480
AQLPGRTDNE IKNLWNSSIK KKLRQKGIDP NTHRPLSEVA AEDKASTSSK NNEKTSQGSS  540
EASLFELEYS TNDQALVAEG PKPSGSVISG TYPRLDNSCN NMVSHHNSTH EFFLNRFLPS  600
HEISSSTCNK PSDMSGFLSF HHRIHYSPSP NTNLFFDSNP RSSDFSNSNL LSMNLITSEN  660
SINHFDPNWS QPCTFSSNGS SSTANCGFFE DNSHNTFSWE AAEMKPAKEI EIPEDNKWAE  720
YLQPPFLNSI HHQTAQDLYA ESKSQVIFQP EASLINGNWH SNQQQQQSSL QATELYSSSK  780
QFQFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-283995035108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00134DAPTransfer from AT1G09540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV48161.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011087570.11e-145transcription factor MYB86
TrEMBLA0A2Z7CM280.0A0A2Z7CM28_9LAMI; Uncharacterized protein
STRINGXP_009628184.11e-136(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09540.14e-84myb domain protein 61