PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV48161.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | MYB | ||||||||
Protein Properties | Length: 785aa MW: 88216 Da PI: 8.8775 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55.7 | 1.2e-17 | 401 | 448 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEde+lv+ ++++G g+W+++++ g+ R++k+c++rw +yl KZV48161.1 401 KGLWSPEEDEKLVKHITKYGHGCWSSVPKLAGLQRCGKSCRLRWINYL 448 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 42 | 2.2e-13 | 454 | 496 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 rg +++eE+ l++++++ lG++ W+ Ia+ ++ gRt++++k+ w+ KZV48161.1 454 RGTFSQEEEGLIIELHAVLGNR-WSQIAAQLP-GRTDNEIKNLWN 496 899*******************.*********.*********998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.0E-27 | 393 | 451 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.393 | 396 | 452 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.61E-29 | 399 | 495 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-13 | 400 | 450 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-15 | 401 | 448 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.64E-11 | 404 | 448 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-24 | 452 | 503 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.014 | 453 | 503 | IPR017930 | Myb domain |
SMART | SM00717 | 1.8E-11 | 453 | 501 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.1E-12 | 454 | 496 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.72E-8 | 456 | 496 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0010214 | Biological Process | seed coat development | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 785 aa Download sequence Send to blast |
MVTRWRFEGS ARIFEGMREH SNVLDSVSLY QMEVLLLWNV SLVSYRLVDR RNRLNWRLLD 60 ALAGHTIKGQ EADEESNEIQ NTIHPILNQE ISQKNNRSLQ NSREFLMNVA YSIGTRVNES 120 ADNNKRVSIP RTANQSGKSS VRDIQVWPLK LTITARWYSD TTNQSVTTPM IALCLSGATP 180 LSAGHNCGSQ SNSASTLTRS HQGTATSACS NLLSRWSRQH SKSCLGAQIQ KLKRTEELSS 240 QLRENLRTTQ LLRAPPKHRS TTSDWYQSKS IGKTNPAPPV LLQTTAEIDD NLMERGSVNN 300 NHRGESQVNH RHTQIPAYSK AKVLESESSA NSNLVSALTL NASVTNQNND VPRFPLTQAK 360 RRHTASHLKQ IPALPSAHVH SGLSNTEPHR HSCCYKQKLR KGLWSPEEDE KLVKHITKYG 420 HGCWSSVPKL AGLQRCGKSC RLRWINYLRP DLKRGTFSQE EEGLIIELHA VLGNRWSQIA 480 AQLPGRTDNE IKNLWNSSIK KKLRQKGIDP NTHRPLSEVA AEDKASTSSK NNEKTSQGSS 540 EASLFELEYS TNDQALVAEG PKPSGSVISG TYPRLDNSCN NMVSHHNSTH EFFLNRFLPS 600 HEISSSTCNK PSDMSGFLSF HHRIHYSPSP NTNLFFDSNP RSSDFSNSNL LSMNLITSEN 660 SINHFDPNWS QPCTFSSNGS SSTANCGFFE DNSHNTFSWE AAEMKPAKEI EIPEDNKWAE 720 YLQPPFLNSI HHQTAQDLYA ESKSQVIFQP EASLINGNWH SNQQQQQSSL QATELYSSSK 780 QFQFS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-28 | 399 | 503 | 5 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00134 | DAP | Transfer from AT1G09540 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV48161.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011087570.1 | 1e-145 | transcription factor MYB86 | ||||
TrEMBL | A0A2Z7CM28 | 0.0 | A0A2Z7CM28_9LAMI; Uncharacterized protein | ||||
STRING | XP_009628184.1 | 1e-136 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09540.1 | 4e-84 | myb domain protein 61 |