PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV47955.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GRAS
Protein Properties Length: 556aa    MW: 62450.4 Da    PI: 6.3938
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV47955.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS411.95.9e-1261865551373
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                 l++lL++cA a+s+++  + ++l+   + ++s  g+p+qRl ay+ e+L ar   s++++y+al++ + +   s++ l+++++++e++P+lkf+h++aN
  KZV47955.1 186 LRQLLIACALALSNHKIDEFEKLVVYARSIVSVIGEPIQRLGAYMIEGLVARKELSGTNIYRALKCDNPD---SKDLLSYMHILYEICPYLKFGHMAAN 281
                 689***************************************************9*************98...9************************* PP

        GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                  aI ea ++e+++HiiDf+i qG+QW++LlqaLa+Rp+g+p++RiTg+++p s+  +   l +++ r a + e++++p+ef++ v    +d++  +L+v
  KZV47955.1 282 GAIAEACKNEDHIHIIDFQIAQGTQWMTLLQALAARPGGAPHVRITGIDDPVSQhaRGGGLAAIRARFAAVSEKFNIPIEFHA-VPVYAADITRAMLNV 379
                 **************************************************9998889999***********************.68889999******* PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 +pgEal+Vn+ lqlh+++desv+++++rd +L+++kslsP+vv++veqe+++n+++F++rf+eal++y+a+f+s++++++r+ +erikvE+++l+r+iv
  KZV47955.1 380 RPGEALVVNFPLQLHHTPDESVDVSNPRDGLLRMIKSLSPTVVTLVEQESNTNTAPFVQRFIEALDFYTAMFESIDVTIARDRKERIKVEEHCLARDIV 478
                 *************************************************************************************************** PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                 n++aceg+er+erhe l+kWr r+++aGF++ pls+++++ ++ ll++++ + y++ e +g+++lgWkdr Lvs+SaW
  KZV47955.1 479 NIIACEGRERVERHELLGKWRLRFMMAGFRQFPLSSYVNSVIRGLLKQYS-EHYTLLETDGAMLLGWKDRYLVSASAW 555
                 **************************************************.55************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.765160537IPR005202Transcription factor GRAS
PfamPF035142.1E-123186555IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MDLNSFRSER TGPDFSNATV SSVPSRLLES LKFDPRNSPT SHFSTHFDTD NLTPCFDSQE  60
QYSSTDNISS NSTLDSHLIR SAGSFVQNLN YNRHVRNALQ ELETALMAPD DEEVTTSKPF  120
LAEHSESRGR GPRSMASNQE SQESHSHQSQ ESHNSRFGNT RNEPNPAGCR RDMEDFALQG  180
TPPNNLRQLL IACALALSNH KIDEFEKLVV YARSIVSVIG EPIQRLGAYM IEGLVARKEL  240
SGTNIYRALK CDNPDSKDLL SYMHILYEIC PYLKFGHMAA NGAIAEACKN EDHIHIIDFQ  300
IAQGTQWMTL LQALAARPGG APHVRITGID DPVSQHARGG GLAAIRARFA AVSEKFNIPI  360
EFHAVPVYAA DITRAMLNVR PGEALVVNFP LQLHHTPDES VDVSNPRDGL LRMIKSLSPT  420
VVTLVEQESN TNTAPFVQRF IEALDFYTAM FESIDVTIAR DRKERIKVEE HCLARDIVNI  480
IACEGRERVE RHELLGKWRL RFMMAGFRQF PLSSYVNSVI RGLLKQYSEH YTLLETDGAM  540
LLGWKDRYLV SASAWY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-5921355530374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV47955.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095306.10.0scarecrow-like protein 21
RefseqXP_020553937.10.0scarecrow-like protein 21
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A2Z7CNK80.0A0A2Z7CNK8_9LAMI; Chitin-inducible gibberellin-responsive protein 1-like
STRINGXP_009594671.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34412448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-161scarecrow-like 5
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]