PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV47927.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GATA
Protein Properties Length: 315aa    MW: 34055.1 Da    PI: 6.5085
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV47927.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA62.74.3e-20234268135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 Cs+Cg+tkTp+WR gp+g+ktLCnaCG++y++ +l
  KZV47927.1 234 CSHCGVTKTPQWRAGPQGSKTLCNACGVRYKSGRL 268
                 *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.4E-8015314IPR016679Transcription factor, GATA, plant
SMARTSM004013.9E-16228282IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.598228264IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.8E-15230292No hitNo description
Gene3DG3DSA:3.30.50.109.1E-16232266IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.19E-15233281No hitNo description
PROSITE patternPS003440234259IPR000679Zinc finger, GATA-type
PfamPF003207.1E-18234268IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MECELGALKS GFEPETAEAE VAAPFVDDVW CVNGVMGDDF FVDELLDFSN GSFSEGETEE  60
KEPGQKESGI VSEEKVATPE KLTFSGNGDF GSLPCSEPGA PAEGLESLEW LSQFIEDSFS  120
DNLFAGKWPH GSVEHLPMPA AAGQKASCFK TPVQTKARTK RSRTGVRVWP MLSPSLTESS  180
TSSSSSTHST MSFSPPKNFT WKPPAKKHGK KQAEHASAGG SSGGVGLISQ PRRCSHCGVT  240
KTPQWRAGPQ GSKTLCNACG VRYKSGRLLP EYRPACSPTF SMELHSNNHR RVLEMRRKKE  300
SEMEAAGLLS PVQSF
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV47927.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011100952.11e-110GATA transcription factor 5-like
SwissprotQ9FH577e-67GATA5_ARATH; GATA transcription factor 5
TrEMBLA0A2Z7CPQ40.0A0A2Z7CPQ4_9LAMI; GATA transcription factor
STRINGMigut.L00033.1.p1e-100(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11542481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.24e-63GATA transcription factor 5