PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV47610.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | GATA | ||||||||
Protein Properties | Length: 229aa MW: 24810.7 Da PI: 9.4334 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.3 | 1.2e-19 | 121 | 155 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC t +TplWR+gp+g+k+LCnaCG++++k+++ KZV47610.1 121 CANCDTASTPLWRNGPRGPKSLCNACGIRFKKEER 155 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 6.2E-18 | 115 | 167 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 13.521 | 115 | 151 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 6.18E-13 | 118 | 155 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.9E-16 | 119 | 155 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.03E-12 | 120 | 152 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 121 | 146 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.4E-17 | 121 | 155 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MMHRCGNSDM VAGGCMCGMY HARRNSFSVR FSKNKDGYLE LNEGGMCSSG SNSPPSSVDC 60 TLSLGTPSTR LSDEKKLSSC MPAGLGWKSF PSKHMSPPPS AVRGGFNGDH SGRDPLLARR 120 CANCDTASTP LWRNGPRGPK SLCNACGIRF KKEERRATAA ASITNSGGGR GAGSQNVMKE 180 SRAPPQKTLY HPSSYTNELQ FAEEDDNRNS TSWRFTITDR QSLVHNFTS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00472 | DAP | Transfer from AT4G36620 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV47610.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022854388.1 | 5e-64 | GATA transcription factor 18-like | ||||
TrEMBL | A0A2Z7CKK6 | 1e-169 | A0A2Z7CKK6_9LAMI; Uncharacterized protein | ||||
STRING | XP_009603282.1 | 1e-54 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3818 | 23 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36620.1 | 1e-38 | GATA transcription factor 19 |