PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV47557.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GRAS
Protein Properties Length: 669aa    MW: 74928 Da    PI: 6.4777
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV47557.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4332.2e-1323046681374
        GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar..svselykalppsetseknsseelaalklfsevsPilkfshlt 97 
                 lv+lLl+cAeavs++d  la+++L +l+  +sp gd+mqR+aa+fteAL+arla   + + + + l+p +  + +  e l++++++++++P++kf+h+t
  KZV47557.1 304 LVHLLLACAEAVSKEDYMLARRYLHHLNRVVSPVGDSMQRVAACFTEALSARLAAtlTNKPTTSNLKPFNPLPPDNLEILKIYQILYQACPYIKFAHFT 402
                 68****************************************************9544556677777777777789*********************** PP

        GRAS  98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196
                 aNqaI ea+e eervHiiD+di qG QWpa++qaLa+Rp+g+p lRiTgv +    s e+++etg+ L+++A++l+vpfef++ v ++le+l++++++ 
  KZV47557.1 403 ANQAIFEAFEAEERVHIIDLDILQGYQWPAFMQALAARPGGAPFLRITGVCP----SPESVRETGRCLTELAHSLHVPFEFHP-VGEELENLKPHMFNR 496
                 ****************************************************....9**************************.7************** PP

        GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295
                 + gEalaVn+v +l+r++    +l     ++L+++++  P++v++veqea+hn++ Fl rfleal+yysa+fdsl+a++p+es +r+kvE++++++ei+
  KZV47557.1 497 RIGEALAVNSVNRLQRVP--GNCLG----NLLNMIRDQAPNIVTIVEQEASHNGPYFLGRFLEALHYYSAIFDSLDATFPPESAQRTKVEQHIFAPEIM 589
                 *****************9..44444....5********************************************************************* PP

        GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 n+va+eg +r++rhe+lekWr+ +e  GF+ vpls +a++q k ll  ++ dgyr+ e++gsl+lgW+dr+++++SaWr
  KZV47557.1 590 NIVAHEGPQRVMRHERLEKWRKVMEGKGFRGVPLSANAVTQSKILLGLYSCDGYRLIEDRGSLLLGWQDRAILAASAWR 668
                 ******************************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.601278648IPR005202Transcription factor GRAS
PfamPF035147.7E-130304668IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 669 aa     Download sequence    Send to blast
MINSLCGSLG SHSSDTGSIK TEMGNLKISV RTENSCTKQE PISPDPKPSS GFEQNKVPSS  60
SNFGTPTSLT TLNIPAALKP EDYEFPSPDY SLWESIFPPD QLDDFMVCSP VRNNHVHSIH  120
GGQNIVLSSP PRFSSPLGPH KGKGMSPLHR FFNSPNNQFF HVESLSLPAL EPPLEDTNSY  180
DQKEDDFAMF SPLKLPSGVE NPLINVPELL DCLPMPNSTS FCNSVVSDQT FVPESSHLTQ  240
ETGIYNGVVS INAPQPLSHQ LQRERNQEEH QQSHRERHLH LPHQPRFMQR QSQIIQEHDS  300
GLQLVHLLLA CAEAVSKEDY MLARRYLHHL NRVVSPVGDS MQRVAACFTE ALSARLAATL  360
TNKPTTSNLK PFNPLPPDNL EILKIYQILY QACPYIKFAH FTANQAIFEA FEAEERVHII  420
DLDILQGYQW PAFMQALAAR PGGAPFLRIT GVCPSPESVR ETGRCLTELA HSLHVPFEFH  480
PVGEELENLK PHMFNRRIGE ALAVNSVNRL QRVPGNCLGN LLNMIRDQAP NIVTIVEQEA  540
SHNGPYFLGR FLEALHYYSA IFDSLDATFP PESAQRTKVE QHIFAPEIMN IVAHEGPQRV  600
MRHERLEKWR KVMEGKGFRG VPLSANAVTQ SKILLGLYSC DGYRLIEDRG SLLLGWQDRA  660
ILAASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-9831166725377Protein SCARECROW
5b3h_D2e-9831166725377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV47557.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011099005.10.0DELLA protein RGL2-like
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A2Z7CNM20.0A0A2Z7CNM2_9LAMI; Protein SCARECROW-like
STRINGMigut.F00040.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA125661922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54220.15e-97GRAS family protein
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]