PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV47512.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HD-ZIP
Protein Properties Length: 275aa    MW: 31149.8 Da    PI: 7.2442
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV47512.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox542.7e-1763115456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 +++++ +q+++Le+ Fe+ +++  e++ +L++ lgL+ rq+ +WFqNrRa+ k
  KZV47512.1  63 KRRLSLDQVKALEKSFESRNKLEPERKMQLSRALGLKPRQIAIWFQNRRARLK 115
                 4578999********************************************98 PP
2HD-ZIP_I/II1201.2e-3862152292
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  kkrrls +qvk+LE+sFe+++kLeperK++l+r+Lgl+prq+a+WFqnrRAR ktk lEkdy++Lk++++a+k+en+ L++++++L+++l 
   KZV47512.1  62 KKRRLSLDQVKALEKSFESRNKLEPERKMQLSRALGLKPRQIAIWFQNRRARLKTKTLEKDYNVLKKQFEAIKAENQDLKSQNKNLQAQLL 152
                  9**************************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.40657117IPR001356Homeobox domain
SMARTSM003897.9E-1659121IPR001356Homeobox domain
SuperFamilySSF466892.87E-1760126IPR009057Homeodomain-like
CDDcd000863.37E-1562117No hitNo description
PfamPF000461.7E-1463115IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-1764124IPR009057Homeodomain-like
PRINTSPR000316.3E-58897IPR000047Helix-turn-helix motif
PROSITE patternPS00027092115IPR017970Homeobox, conserved site
PRINTSPR000316.3E-597113IPR000047Helix-turn-helix motif
CDDcd146860.00369110151No hitNo description
PfamPF021832.2E-10117155IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MFGNHEDSHL ASSSSFAPQD YHGVAQFMMR TSISYPGMDR AEELQPEDDM SDEESLSLGE  60
IKKRRLSLDQ VKALEKSFES RNKLEPERKM QLSRALGLKP RQIAIWFQNR RARLKTKTLE  120
KDYNVLKKQF EAIKAENQDL KSQNKNLQAQ LLALRSGDSV GPGPRNLNKD SEKSWGHGSV  180
NSFDHVNLNT TPKDSTLYPC TGNQNAVVLP SSNVVHPSGS LTQVLLHSIS RQDHHHHHHL  240
PGPATAQNEG FCNVFGNIDE NPEFWPWPEQ QNLLH
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV47512.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098601.11e-102homeobox-leucine zipper protein HOX21
TrEMBLA0A2Z7CK950.0A0A2Z7CK95_9LAMI; Homeobox protein 20
STRINGMigut.H00906.1.p8e-80(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8482498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.12e-46HD-ZIP family protein