PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV47340.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | GRAS | ||||||||
Protein Properties | Length: 726aa MW: 79445.7 Da PI: 5.7777 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 340 | 4e-104 | 366 | 725 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 +++L+++Ae v++g+ laq++Larl+++ sp ++p++R+a+y +eAL+ l+ ++ + l p ++s+ + + ++ a+k+fse+sP+++f+h+t+Nq KZV47340.1 366 IDQLYKAAELVQTGNPVLAQEILARLNHQFSPIDKPFHRAAFYCKEALQLLLQT--NNNLD-LCPATSSPFSLIFKIGAYKAFSEISPLVQFAHFTCNQ 461 689*************************************************98..33333.4455555677*************************** PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeL.rvkp 198 a+lea++g +r+Hi+Dfdi++G+QW++L+q+La R+eg+psl+iT+++s++++++ el t+e+L +fA+e+++ fef+v+ ++l++ + ++ +++ KZV47340.1 462 ALLEAFDGFHRIHIVDFDIGYGGQWASLIQELALRNEGTPSLKITVLASASTHDQIELGLTRENLVQFASEVNLAFEFEVMSIESLNSGSWSQCwHMSD 560 ********************************************************************************9889999998888757788 PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnv 297 gE++aVnl + +l++ +vs++ vL++vk+lsP++vv v++ +d+++ sF++++++al+ ys l++sl+a ++++++k+Er+l+++ i++v KZV47340.1 561 GEVVAVNLPVG--SLVNYQVSVPL----VLHFVKQLSPRIVVSVDRGCDRTDLSFANHMIHALQSYSNLLESLDAV-NMNADAMQKIERFLIHPGIEKV 652 ********995..45544666666....*********************************************776.5789****************** PP GRAS 298 vacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 v+ + + e+ ++Wr ++ ++G++pv++s+++++qa++ll+k++++g+ +e+++ slvl+W++++L+s+SaWr KZV47340.1 653 VMGRFRY----PEKTQHWRTMFLSSGLSPVAFSNFTESQAECLLKKTPVRGFLIEKRQSSLVLCWQRKELISASAWR 725 *987776....9****************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 45.237 | 339 | 705 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.4E-101 | 366 | 725 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048768 | Biological Process | root hair cell tip growth | ||||
GO:0051301 | Biological Process | cell division |
Sequence ? help Back to Top |
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Protein Sequence Length: 726 aa Download sequence Send to blast |
MKGMPLPFDF EGPGALDLEL VVERRGVCGT LSFDFFKKNC FLDSSFVEPT SVLDSARISS 60 RPTSSSTLSS SFCGGATSTD TAGVAAVSDT NPSPKWQQDS TTATSSNVGP VDSELLPVPT 120 SLETGIGNAE KCAMEDWESV LSEPLTVSPT QEQSILRMII GDAEDPGMGN LQYTGGGASS 180 AAAEFEFNAG NSNRSNAGNA VLPSNAPSNY KFAPGSKNLV HPSSISDNFG AVGPHHQATF 240 DSSAEMKPPI FSPQLLMNQH QIQQSQNPSF YLPLTFAQHQ EQNPFVAPQA KRLNTGTICG 300 GQISKGSYEN TGQQDLLINR QQAIPHQLQL LPQYPQHRPM GSGQKPKIGG GEEPGHCLQQ 360 QQQAIIDQLY KAAELVQTGN PVLAQEILAR LNHQFSPIDK PFHRAAFYCK EALQLLLQTN 420 NNLDLCPATS SPFSLIFKIG AYKAFSEISP LVQFAHFTCN QALLEAFDGF HRIHIVDFDI 480 GYGGQWASLI QELALRNEGT PSLKITVLAS ASTHDQIELG LTRENLVQFA SEVNLAFEFE 540 VMSIESLNSG SWSQCWHMSD GEVVAVNLPV GSLVNYQVSV PLVLHFVKQL SPRIVVSVDR 600 GCDRTDLSFA NHMIHALQSY SNLLESLDAV NMNADAMQKI ERFLIHPGIE KVVMGRFRYP 660 EKTQHWRTMF LSSGLSPVAF SNFTESQAEC LLKKTPVRGF LIEKRQSSLV LCWQRKELIS 720 ASAWRC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-33 | 380 | 725 | 18 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV47340.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090295.1 | 0.0 | scarecrow-like protein 6 | ||||
Swissprot | O81316 | 1e-137 | SCL6_ARATH; Scarecrow-like protein 6 | ||||
TrEMBL | A0A2Z7CJQ3 | 0.0 | A0A2Z7CJQ3_9LAMI; Scarecrow-like protein 22-like | ||||
STRING | PGSC0003DMT400066799 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA6253 | 22 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 1e-136 | GRAS family protein |
Publications ? help Back to Top | |||
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