PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV47338.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | C2H2 | ||||||||
Protein Properties | Length: 192aa MW: 21233 Da PI: 7.052 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.5 | 0.00095 | 87 | 109 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C+k F++ L H +H KZV47338.1 87 YRCEICSKLFRSFQALGGHRASH 109 9**********999999888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.82E-8 | 85 | 156 | No hit | No description |
Pfam | PF13912 | 1.1E-10 | 86 | 111 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.086 | 87 | 109 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.868 | 87 | 114 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 89 | 109 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.48 | 134 | 156 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.621 | 134 | 156 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 9.1E-7 | 136 | 156 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 136 | 156 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence Send to blast |
MDEGFLVDEE KVEADECLSP PLGSESLSSS VSDVTHEEDA AHCLIMLSRD KRRDEVECPT 60 EGKEKKSKSQ DSCLEKVMKN KARAKYYRCE ICSKLFRSFQ ALGGHRASHN KIRVNTRDSG 120 GDSKSTTMVL ERTIACPLCP RVFTSGQAFG GHKRTHFIAA TPKTIAVTGS IPGNGECFDI 180 DLNLPPSFDQ RF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV47338.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011090203.1 | 6e-39 | zinc finger protein ZAT4 | ||||
TrEMBL | A0A2Z7CK68 | 1e-140 | A0A2Z7CK68_9LAMI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1095 | 24 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60580.1 | 2e-28 | C2H2-like zinc finger protein |