PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV47245.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

C2H2

Protein Properties

Length: 306aa MW: 34689.1 Da PI: 7.498

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV47245.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.5e-05	137	156	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C+ C+k+F+r nL+ H+ KZV47245.1 137 FFCHLCPKTFNRYNNLQMHM 156 67*****************9 PP
2	zf-C2H2	12.1	0.00058	221	243	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C k+F k + ++H +++ KZV47245.1 221 FTCRKCAKPFAVKGDWRTHEKNC 243 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.05E-5	131	159	No hit	No description
PROSITE profile	PS50157	9.972	137	164	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	139	159	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.61E-5	203	241	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MTEPYNNFRA QCFNFIPLHS SSSHHQYYPQ YTSSPPREAL PLINALSLNQ DSCTEPSSDY 60 SHNYQRSSPK HPDFIEDENV TVALHIGLPS PSSEVGCGDI TDKDGADILS GLPLNRMNMG 120 QYWIPTPSQI LIGPTQFFCH LCPKTFNRYN NLQMHMWGHG SQYRKGPESL RGTQPTAMLR 180 LPCYCCAPDC KHNINNPTAK PLKDFRTLQT HYKRKHGSKP FTCRKCAKPF AVKGDWRTHE 240 KNCGKIWYCI CGSDFKHKRS LKDHIKAFGR GHGGLGIELE LEQLDDEDEE SMSEIEQGGD 300 QCSSSM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269\|PubMed:17600712, ECO:0000269\|PubMed:23515580, ECO:0000269\|PubMed:25039392}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV47245.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019267064.1	1e-132	PREDICTED: zinc finger protein WIP2-like
Swissprot	Q9SVY1	1e-112	ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBL	A0A2Z7CLN5	0.0	A0A2Z7CLN5_9LAMI; Protein TRANSPARENT TESTA 1-like
STRING	XP_009763748.1	1e-129	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA462	24	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-108	C2H2 family protein

Publications ? help Back to Top
Crawford BC, et al. Plant development. Genetic control of distal stem cell fate within root and embryonic meristems. Science, 2015. 347(6222): p. 655-9 [PMID:25612610] Boex-Fontvieille E, et al. An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence. Front Plant Sci, 2016. 7: p. 1246 [PMID:27625656]