PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV46915.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 283aa    MW: 32678.8 Da    PI: 6.4356
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV46915.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93.1e-151663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W+++Ed++l++++ ++G g+W++++   g+ R +k+c++rw +yl
       KZV46915.1 16 KGLWSPDEDQKLKNYIMMYGHGCWSSVPTNAGLQRNGKSCRLRWINYL 63
                     678*******************************************97 PP
2Myb_DNA-binding52.41.2e-1669114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++ +E+e ++ +++ lG++ W+ Iar+++ gRt++++k++w++yl
       KZV46915.1  69 RGMFSMQEEETILTLHQILGNK-WSQIARHLP-GRTDNEIKNHWHSYL 114
                      788999****************.*********.************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.8361163IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.0E-221165IPR009057Homeodomain-like
SuperFamilySSF466894.4E-2914110IPR009057Homeodomain-like
SMARTSM007171.3E-111565IPR001005SANT/Myb domain
PfamPF002496.2E-141663IPR001005SANT/Myb domain
CDDcd001677.48E-101963No hitNo description
PROSITE profilePS5129424.6564118IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2466118IPR009057Homeodomain-like
SMARTSM007172.1E-1368116IPR001005SANT/Myb domain
PfamPF002491.1E-1469114IPR001005SANT/Myb domain
CDDcd001674.75E-1075114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MGCRPLDHKP KKKHRKGLWS PDEDQKLKNY IMMYGHGCWS SVPTNAGLQR NGKSCRLRWI  60
NYLRPGLKRG MFSMQEEETI LTLHQILGNK WSQIARHLPG RTDNEIKNHW HSYLKKRVAK  120
KAETEARIKD ECANNQSLMV EALPPVDSIS QNSTAESFEN KDGLILETDH SWGAQKNNLP  180
KVLFTEWLAL DQFHGQEPVN PGTEVDLKST NIDQYNIPNV NDDGLLHSLF LNEGPFEMQS  240
HDLFVDDMIR SQSPFSFQDP NSDSGLINYF PREFDLFCDD IYM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-24161187108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV46915.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020549243.11e-111transcription factor LAF1-like
TrEMBLA0A2Z7CKV20.0A0A2Z7CKV2_9LAMI; Uncharacterized protein
STRINGSolyc03g025870.2.15e-92(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.17e-61myb domain protein 19