PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | KZV46604.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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Family | FAR1 | ||||||||
Protein Properties | Length: 164aa MW: 18962.8 Da PI: 10.7645 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 78 | 1.8e-24 | 26 | 122 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn+YA+++GFs r ++skk+k ++e+++++fvC keg+++e +++ + ++r r rtgCk kl++ ke+ ++w ++++ ++HnH+l+ KZV46604.1 26 SFYNQYARQAGFSARLNNSKKNKITNEVVWKQFVCVKEGYTDEIRSSkkligdQPIRERARGGVRTGCKSKLTIVKEQtGSNWIISTFIENHNHQLS 122 5***************************************99987777899866667778999**********99998899**************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.5E-22 | 26 | 122 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MYVPQVVDER KPKIRMRFAS IDEAFSFYNQ YARQAGFSAR LNNSKKNKIT NEVVWKQFVC 60 VKEGYTDEIR SSKKLIGDQP IRERARGGVR TGCKSKLTIV KEQTGSNWII STFIENHNHQ 120 LSTPSKVHLL RSHRSVSTTK KALTQQFAKA NVPTYQQMRL LEIE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | KZV46604.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015878435.1 | 7e-62 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2Z7CPQ5 | 1e-119 | A0A2Z7CPQ5_9LAMI; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-24 | FAR1-related sequence 5 |