PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV46603.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

GRAS

Protein Properties

Length: 808aa MW: 90886 Da PI: 5.8796

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV46603.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	367.3	2e-112	434	805	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 l++lL++cA+ v+s+d + a + L+++++++s++gd qRla++f+ +L+arla++++ely++l ++ + +e+l+a++++ ++sP+ k + ++aN KZV46603.1 434 LRTLLISCAQSVASDDRRTAYEQLKQIKNHSSKTGDVYQRLATVFASGLEARLAGTGTELYASLVRKKIT---AAEKLKAYQVYLQASPFKKTCIILAN 529 6789**********************************************************999998...9********************* PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 ++I +++++++Hi+Df+i +G+QWp L+q L++Rp+gpp+lRiTg++ p++g ++ +eetg+rL+k++e++gvpfe+++++ +++e++++e+L++ KZV46603.1 530 KMIGLMASEANTLHIVDFGILYGFQWPILIQHLSQRPGGPPKLRITGIEFPQPGfrPEQLIEETGSRLKKYCERFGVPFEYQAIALQNWEAVKIEDLKI 628 **************************************************999999************************************* PP GRAS 197 kpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreiv 295 ++gE+laVn+ ++l rllde+v +s+rd+vL+l++sl+P+++v ++ +++s+ F++rf eal +ysalfd+++++lpr++ eri+ E+ + grei KZV46603.1 629 RSGEVLAVNSLFRLGRLLDETVVDDSPRDAVLNLIRSLKPNIFVNGVSNGSYSSPFFVTRFKEALFHYSALFDMFDSTLPRDNPERINFEQDFSGREII 727 *********************************************************************************************** PP GRAS 296 nvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373 n++acegaer+er et+++W+ r ++aGFk++pl+++++k+ k+ ++ + + + +e+ +++++gWk+r ++++S+W KZV46603.1 728 NAIACEGAERVERPETYKQWQVRYGRAGFKQLPLNQEIMKKLKHKVAAGYHKDFLCDEDGNWMLQGWKGRIMYAISCW 805 ******************************************9999888*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	63.599	408	786	IPR005202	Transcription factor GRAS
Pfam	PF03514	7.1E-110	434	805	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 808 aa Download sequence Send to blast
MEMMYTDIVQ ALKAKGITAD PKDYLTFFCL GNREKKLSGE YEPSEKPDPD TDYSRAQQAR 60 RGMIYVHAKM MIGERILTRQ QRRRPVVQGQ FGGASERAVT GGGGVVNGDG RASMGTAKGN 120 CERISGLMEY QFNGLNDPIN GLKFDDEDFL STGEQSAAPF NGLKHGSLDL DVLDIPFLPL 180 SPDSLDFTPS STASYEAESP DDQNSDPVIK FLNQILIEEN MEEKPSMFHD PLALHAAEKS 240 LYAILGQKHP LDNVVDQTSD SRDSFLGSSS ENTSSSMVVI FPLILNGLLI LFKRGREEAS 300 KFLPTENQLI IDLEQYELPN KTEIISLDAV VKEEEDRTEQ FNNGSRGRKH HQREDSDSEN 360 VERSRKQAAN YKEDVELSDM FDRVLLFRDA CCDANADLPT PMITTVQQAL LPSGSTGGRT 420 RAKKNEKKRE TVDLRTLLIS CAQSVASDDR RTAYEQLKQI KNHSSKTGDV YQRLATVFAS 480 GLEARLAGTG TELYASLVRK KITAAEKLKA YQVYLQASPF KKTCIILANK MIGLMASEAN 540 TLHIVDFGIL YGFQWPILIQ HLSQRPGGPP KLRITGIEFP QPGFRPEQLI EETGSRLKKY 600 CERFGVPFEY QAIALQNWEA VKIEDLKIRS GEVLAVNSLF RLGRLLDETV VDDSPRDAVL 660 NLIRSLKPNI FVNGVSNGSY SSPFFVTRFK EALFHYSALF DMFDSTLPRD NPERINFEQD 720 FSGREIINAI ACEGAERVER PETYKQWQVR YGRAGFKQLP LNQEIMKKLK HKVAAGYHKD 780 FLCDEDGNWM LQGWKGRIMY AISCWIPA

Sequence ? help Back to Top

Protein Sequence Length: 808 aa Download sequence Send to blast

MEMMYTDIVQ ALKAKGITAD PKDYLTFFCL GNREKKLSGE YEPSEKPDPD TDYSRAQQAR  60
RGMIYVHAKM MIGERILTRQ QRRRPVVQGQ FGGASERAVT GGGGVVNGDG RASMGTAKGN  120
CERISGLMEY QFNGLNDPIN GLKFDDEDFL STGEQSAAPF NGLKHGSLDL DVLDIPFLPL  180
SPDSLDFTPS STASYEAESP DDQNSDPVIK FLNQILIEEN MEEKPSMFHD PLALHAAEKS  240
LYAILGQKHP LDNVVDQTSD SRDSFLGSSS ENTSSSMVVI FPLILNGLLI LFKRGREEAS  300
KFLPTENQLI IDLEQYELPN KTEIISLDAV VKEEEDRTEQ FNNGSRGRKH HQREDSDSEN  360
VERSRKQAAN YKEDVELSDM FDRVLLFRDA CCDANADLPT PMITTVQQAL LPSGSTGGRT  420
RAKKNEKKRE TVDLRTLLIS CAQSVASDDR RTAYEQLKQI KNHSSKTGDV YQRLATVFAS  480
GLEARLAGTG TELYASLVRK KITAAEKLKA YQVYLQASPF KKTCIILANK MIGLMASEAN  540
TLHIVDFGIL YGFQWPILIQ HLSQRPGGPP KLRITGIEFP QPGFRPEQLI EETGSRLKKY  600
CERFGVPFEY QAIALQNWEA VKIEDLKIRS GEVLAVNSLF RLGRLLDETV VDDSPRDAVL  660
NLIRSLKPNI FVNGVSNGSY SSPFFVTRFK EALFHYSALF DMFDSTLPRD NPERINFEQD  720
FSGREIINAI ACEGAERVER PETYKQWQVR YGRAGFKQLP LNQEIMKKLK HKVAAGYHKD  780
FLCDEDGNWM LQGWKGRIMY AISCWIPA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-44	438	805	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV46603.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011089502.1	0.0	scarecrow-like protein 14
Refseq	XP_020552354.1	0.0	scarecrow-like protein 14
Refseq	XP_020552355.1	0.0	scarecrow-like protein 14
Swissprot	P0C883	0.0	SCL33_ARATH; Scarecrow-like protein 33
TrEMBL	A0A2Z7CIR4	0.0	A0A2Z7CIR4_9LAMI; Scarecrow-like protein 14-like
STRING	Migut.D02079.1.p	0.0	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14