PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV46507.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

MYB_related

Protein Properties

Length: 578aa MW: 62903.8 Da PI: 4.7839

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV46507.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.5	2.3e-11	20	61	2	45
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 g+WT +E +ll++a++++ + W+ Ia+++ ++t qc++++ KZV46507.1 20 GKWTDQETLLLLEAIELFRDN-WSEIAEHVA-TKTKAQCILHFV 61 89***************77.*****.********95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.6E-9	17	60	IPR009057	Homeodomain-like
SuperFamily	SSF46689	6.73E-13	17	71	IPR009057	Homeodomain-like
PROSITE profile	PS51293	20.946	17	68	IPR017884	SANT domain
SMART	SM00717	1.5E-11	18	66	IPR001005	SANT/Myb domain
Pfam	PF00249	3.0E-11	20	62	IPR001005	SANT/Myb domain
CDD	cd00167	7.31E-10	21	63	No hit	No description
Pfam	PF16495	1.3E-22	423	503	IPR032451	SMARCC, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 578 aa Download sequence Send to blast
MSVSDFILME SAEAGGVSGG KWTDQETLLL LEAIELFRDN WSEIAEHVAT KTKAQCILHF 60 VQMPIGDVFF NSDDENNVVP KENGLPVSLT TENSSPKADH DTGTDVKDVA DKTENEGDAT 120 DNQASSSPME IPKPEEEDDS DRSLEFTENF TQKALKDAFE AVGSLFSPGE KLSFVEAGNP 180 VMVLAAFLVR LVQPNVASAS VHSFLKASSA KHSSEQLAAR HCLPLEDPPD EKKKLADAER 240 AATETVEGEI HKDENAHVER QNEETSNSAV EGISIQDDDK DENKESTSEE HKGKKDTSSE 300 QKLVASTSSD ILEFPSKHSL KDAEASGGSV SHTQLNFNHV KESENGASAM EELCRTQAPP 360 TDKNSTSNSE KQDTEPFFMS NSVTEIEQST GDKEAKEHVG KKNNTLVTKT DLDINKLKRA 420 AVTALSAAAV KAKLLAEEEE SQIRQLAILL AEKQLHKLET KLAFFGDLES VVLRVKEQLD 480 RSKQRLFQER AQIIAQRLGM PASARPTSHH LLPSRAAAPA SNFPNQALRP LMGANSLRPP 540 ISRPTMAPNP ASSTLMPINA AGSSMHHNSD KFSSFGAK

Sequence ? help Back to Top

Protein Sequence Length: 578 aa Download sequence Send to blast

MSVSDFILME SAEAGGVSGG KWTDQETLLL LEAIELFRDN WSEIAEHVAT KTKAQCILHF  60
VQMPIGDVFF NSDDENNVVP KENGLPVSLT TENSSPKADH DTGTDVKDVA DKTENEGDAT  120
DNQASSSPME IPKPEEEDDS DRSLEFTENF TQKALKDAFE AVGSLFSPGE KLSFVEAGNP  180
VMVLAAFLVR LVQPNVASAS VHSFLKASSA KHSSEQLAAR HCLPLEDPPD EKKKLADAER  240
AATETVEGEI HKDENAHVER QNEETSNSAV EGISIQDDDK DENKESTSEE HKGKKDTSSE  300
QKLVASTSSD ILEFPSKHSL KDAEASGGSV SHTQLNFNHV KESENGASAM EELCRTQAPP  360
TDKNSTSNSE KQDTEPFFMS NSVTEIEQST GDKEAKEHVG KKNNTLVTKT DLDINKLKRA  420
AVTALSAAAV KAKLLAEEEE SQIRQLAILL AEKQLHKLET KLAFFGDLES VVLRVKEQLD  480
RSKQRLFQER AQIIAQRLGM PASARPTSHH LLPSRAAAPA SNFPNQALRP LMGANSLRPP  540
ISRPTMAPNP ASSTLMPINA AGSSMHHNSD KFSSFGAK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV46507.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088374.1	0.0	SWI/SNF complex subunit SWI3D
TrEMBL	A0A2Z7CKT5	0.0	A0A2Z7CKT5_9LAMI; Uncharacterized protein
STRING	Migut.B00247.1.p	0.0	(Erythranthe guttata)